Wall clock time and date at job start Mon Mar 30 2020 03:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00326 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99885 * 3 2 1 7 7 C 1.38951 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99421 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00123 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00229 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99772 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.96322 * 58.75620 * 12 10 9 14 14 C 1.54021 * 109.97331 * 297.47261 * 12 10 9 15 15 S 1.81924 * 104.39136 * 207.82965 * 14 12 10 16 16 C 1.71755 * 97.66010 * 18.86220 * 15 14 12 17 17 O 1.21327 * 125.75312 * 181.21869 * 16 15 14 18 18 C 1.50444 * 108.49041 * 1.20144 * 16 15 14 19 19 H 0.96996 * 120.00340 * 359.97438 * 1 2 3 20 20 H 0.97000 * 120.00144 * 0.02562 * 9 7 2 21 21 H 1.08996 * 110.45303 * 326.55867 * 14 12 10 22 22 H 1.09000 * 110.45282 * 89.10566 * 14 12 10 23 23 H 1.09001 * 109.24650 * 217.86144 * 18 16 15 24 24 H 1.09000 * 109.24819 * 98.50768 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1018 1.6965 1.2124 6 1 3.1018 1.6964 -1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0022 13 1 0.5979 -4.9201 -0.8740 14 6 0.4019 -4.9838 1.2863 15 16 0.2672 -6.7754 1.5717 16 6 1.5882 -7.2638 0.5885 17 8 1.9451 -8.4076 0.3979 18 6 2.2276 -6.0342 0.0033 19 1 -0.4850 0.8400 0.0004 20 1 0.3534 -2.3907 -0.0002 21 1 0.9101 -4.5022 2.1216 22 1 -0.5854 -4.5467 1.1369 23 1 2.5384 -6.2434 -1.0203 24 1 3.1029 -5.7678 0.5957 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306489853.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:30 Heat of formation + Delta-G solvation = -103.258921 kcal Electronic energy + Delta-G solvation = -12108.589089 eV Core-core repulsion = 9726.021968 eV Total energy + Delta-G solvation = -2382.567122 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.83797 -39.93042 -36.44431 -35.79964 -33.28802 -29.48753 -27.39854 -25.58147 -22.83913 -20.85840 -19.97704 -18.55623 -18.26051 -16.97554 -16.63101 -16.09800 -15.96062 -15.77584 -15.01872 -14.77301 -14.51606 -13.99585 -13.50285 -12.95997 -12.79282 -12.45197 -12.38863 -12.16444 -12.09965 -11.53764 -10.65474 -10.36866 -10.05592 -9.55522 -8.49092 -5.97798 0.25293 0.35886 0.87755 1.39963 1.45276 1.54512 1.94209 2.27888 2.78319 3.13670 3.34890 3.60520 3.69557 3.87977 4.25481 4.47102 4.54525 4.78845 4.86585 5.41165 5.77774 5.95641 6.53288 7.08259 7.49131 8.02559 8.66979 Molecular weight = 215.04amu Principal moments of inertia in cm(-1) A = 0.068517 B = 0.007136 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.558507 B = 3923.043064 C = 4218.920181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.005 4.005 3 Si 0.989 3.011 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.338 4.338 8 H 0.082 0.918 9 N -0.556 5.556 10 C 0.449 3.551 11 O -0.629 6.629 12 C -0.086 4.086 13 H 0.134 0.866 14 C -0.078 4.078 15 S -0.148 6.148 16 C 0.367 3.633 17 O -0.452 6.452 18 C -0.165 4.165 19 H 0.280 0.720 20 H 0.401 0.599 21 H 0.105 0.895 22 H 0.147 0.853 23 H 0.118 0.882 24 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 -6.124 1.444 7.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.207 4.207 3 Si 0.813 3.187 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.100 0.900 9 N -0.191 5.191 10 C 0.235 3.765 11 O -0.516 6.516 12 C -0.109 4.109 13 H 0.152 0.848 14 C -0.226 4.226 15 S 0.087 5.913 16 C 0.136 3.864 17 O -0.334 6.334 18 C -0.210 4.210 19 H 0.089 0.911 20 H 0.236 0.764 21 H 0.123 0.877 22 H 0.165 0.835 23 H 0.136 0.864 24 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.432 -7.188 2.047 8.224 hybrid contribution 0.911 1.516 -0.767 1.928 sum -2.521 -5.672 1.279 6.338 Atomic orbital electron populations 1.69635 1.06696 1.29608 1.49235 1.25983 0.96489 1.02282 0.95911 0.85033 0.77840 0.76860 0.78938 1.19629 1.19718 1.19832 1.19647 0.92859 0.83816 1.50390 0.90035 1.41844 1.09562 1.04357 1.63324 1.20068 0.87680 0.85334 0.83404 1.90529 1.15729 1.87628 1.57753 1.21501 0.96791 0.91958 1.00630 0.84777 1.24297 1.06199 0.92166 0.99965 1.85943 1.38852 1.08164 1.58320 1.25735 0.86491 0.92277 0.81870 1.90596 1.62890 1.22322 1.57573 1.22367 1.01056 0.91601 1.06003 0.91090 0.76427 0.87679 0.83539 0.86427 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.42 13.05 21.66 0.28 -45.14 14 2 C -0.01 -0.27 5.50 84.93 0.47 0.20 14 3 Si 0.99 40.16 29.55 68.60 2.03 42.19 14 4 H -0.27 -10.46 7.11 99.48 0.71 -9.75 14 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 14 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 14 7 C -0.34 -17.61 9.68 84.04 0.81 -16.80 14 8 H 0.08 4.56 7.16 -2.91 -0.02 4.54 14 9 N -0.56 -25.26 5.23 -306.99 -1.60 -26.86 14 10 C 0.45 18.73 6.99 87.66 0.61 19.34 14 11 O -0.63 -31.53 15.12 -3.07 -0.05 -31.57 14 12 C -0.09 -2.50 3.12 -11.21 -0.03 -2.53 14 13 H 0.13 3.21 8.14 -2.39 -0.02 3.19 14 14 C -0.08 -1.89 6.61 72.33 0.48 -1.41 14 15 S -0.15 -3.67 22.85 -56.49 -1.29 -4.96 14 16 C 0.37 10.66 7.83 71.16 0.56 11.22 14 17 O -0.45 -15.48 18.03 -3.17 -0.06 -15.53 14 18 C -0.17 -4.80 5.37 29.75 0.16 -4.64 14 19 H 0.28 13.15 8.31 -92.71 -0.77 12.38 14 20 H 0.40 16.91 7.89 -92.71 -0.73 16.18 14 21 H 0.10 2.74 7.95 -2.39 -0.02 2.73 14 22 H 0.15 2.89 8.14 -2.39 -0.02 2.87 14 23 H 0.12 3.24 8.14 -2.39 -0.02 3.22 14 24 H 0.11 3.73 7.16 -2.39 -0.02 3.71 14 Total: -1.00 -60.91 233.14 2.87 -58.05 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.50 Total: 18.46 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 3.05 Total: 5.37 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -1.32 Total: -72.00 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -0.10 Total: -47.11 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.29 Total: -4.96 kcal Total: -60.91 2.87 -58.05 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306489853.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.213 kcal (2) G-P(sol) polarization free energy of solvation -60.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds