Wall clock time and date at job start Mon Mar 30 2020 02:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00484 * 2 1 4 4 H 1.09001 * 109.47255 * 30.00292 * 3 2 1 5 5 C 1.53006 * 109.47036 * 270.00415 * 3 2 1 6 6 C 1.52997 * 109.47356 * 150.00272 * 3 2 1 7 7 H 1.08998 * 109.48593 * 60.02297 * 6 3 2 8 8 C 1.53096 * 109.47992 * 299.99951 * 6 3 2 9 9 C 1.53181 * 109.16322 * 182.41279 * 8 6 3 10 10 C 1.53182 * 109.03791 * 56.97697 * 9 8 6 11 11 C 1.53086 * 109.16395 * 303.01932 * 10 9 8 12 12 H 1.09000 * 109.48004 * 177.60402 * 11 10 9 13 13 C 1.50700 * 109.48372 * 297.62871 * 11 10 9 14 14 H 1.08000 * 119.99935 * 359.97438 * 13 11 10 15 15 C 1.37884 * 120.00106 * 179.97438 * 13 11 10 16 16 N 1.31515 * 119.99823 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00124 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46986 * 59.99917 * 17 15 13 19 19 H 1.48498 * 109.47333 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47227 * 300.00568 * 17 15 13 21 21 O 1.42906 * 109.48146 * 180.02562 * 6 3 2 22 22 H 1.09001 * 109.46884 * 300.00129 * 1 2 3 23 23 H 1.08994 * 109.47236 * 59.99272 * 1 2 3 24 24 H 1.08995 * 109.47348 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47002 * 299.99477 * 5 3 2 26 26 H 1.08993 * 109.46955 * 59.99914 * 5 3 2 27 27 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 28 28 H 1.09000 * 109.51907 * 302.31447 * 8 6 3 29 29 H 1.08993 * 109.52260 * 62.50234 * 8 6 3 30 30 H 1.09000 * 109.54194 * 176.84834 * 9 8 6 31 31 H 1.09002 * 109.53507 * 297.02446 * 9 8 6 32 32 H 1.08994 * 109.51696 * 62.92980 * 10 9 8 33 33 H 1.09000 * 109.51668 * 183.11570 * 10 9 8 34 34 H 0.97000 * 119.99623 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7713 -1.4426 6 6 3.3590 1.2631 0.7212 7 1 4.0245 0.5695 0.2073 8 6 3.1517 0.7969 2.1646 9 6 4.4970 0.8150 2.8970 10 6 5.0884 2.2260 2.8209 11 6 5.2209 2.6369 1.3522 12 1 5.6015 3.6565 1.2929 13 6 6.1748 1.7029 0.6531 14 1 6.6405 0.8971 1.2010 15 6 6.4530 1.8771 -0.6861 16 7 5.8863 2.8586 -1.3532 17 14 7.6360 0.7199 -1.5525 18 1 7.1178 -0.6695 -1.4715 19 1 7.7643 1.1186 -2.9772 20 1 8.9668 0.7907 -0.8974 21 8 3.9402 2.5686 0.7218 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 2.8829 1.0774 -1.9564 26 1 1.2569 1.8014 -1.9563 27 1 2.6607 2.7672 -1.4426 28 1 2.4544 1.4672 2.6672 29 1 2.7497 -0.2162 2.1660 30 1 4.3477 0.5378 3.9405 31 1 5.1782 0.1067 2.4253 32 1 4.4302 2.9250 3.3368 33 1 6.0714 2.2347 3.2917 34 1 6.0823 2.9814 -2.2952 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306637057.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:08 Heat of formation + Delta-G solvation = -126.134817 kcal Electronic energy + Delta-G solvation = -15657.102844 eV Core-core repulsion = 13167.882978 eV Total energy + Delta-G solvation = -2489.219866 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34018 -38.61970 -34.63118 -34.14344 -33.02144 -30.53277 -27.85771 -27.26627 -25.20859 -23.76722 -21.96190 -20.76902 -18.49052 -17.46637 -17.09997 -16.57328 -16.06141 -15.61181 -15.47385 -15.13097 -14.66521 -14.31946 -13.85893 -13.55635 -13.33735 -12.98864 -12.78599 -12.69844 -12.56588 -12.39768 -12.18220 -11.86569 -11.71227 -11.44550 -11.13325 -10.76538 -10.51197 -10.32219 -9.59977 -8.06152 -6.25672 1.39193 1.40331 1.46881 2.41390 2.65083 3.21641 3.80547 3.92505 4.16657 4.22217 4.31427 4.41018 4.51958 4.58663 4.60072 4.71640 4.83699 4.85605 4.91802 4.94936 5.06399 5.15364 5.27286 5.32554 5.39684 5.48863 5.55676 5.68598 5.83354 6.19696 6.36282 6.78853 7.15697 7.49920 8.97466 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026878 B = 0.012716 C = 0.010340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.504007 B = 2201.481111 C = 2707.350999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.104 3.896 4 H 0.069 0.931 5 C -0.149 4.149 6 C 0.108 3.892 7 H 0.028 0.972 8 C -0.131 4.131 9 C -0.106 4.106 10 C -0.136 4.136 11 C 0.208 3.792 12 H 0.030 0.970 13 C -0.564 4.564 14 H 0.053 0.947 15 C 0.035 3.965 16 N -0.887 5.887 17 Si 0.938 3.062 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.269 1.269 21 O -0.386 6.386 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.102 0.898 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.894 -4.213 4.032 10.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C 0.046 3.954 4 H 0.087 0.913 5 C -0.206 4.206 6 C 0.049 3.951 7 H 0.046 0.954 8 C -0.169 4.169 9 C -0.143 4.143 10 C -0.174 4.174 11 C 0.152 3.848 12 H 0.047 0.953 13 C -0.601 4.601 14 H 0.071 0.929 15 C -0.168 4.168 16 N -0.524 5.524 17 Si 0.764 3.236 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.194 1.194 21 O -0.306 6.306 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.121 0.879 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.890 -4.117 3.785 10.503 hybrid contribution 0.900 -0.343 -0.716 1.200 sum -7.990 -4.460 3.069 9.652 Atomic orbital electron populations 1.22996 0.79435 1.03893 1.00743 1.87830 1.21524 1.27555 1.95210 1.21790 0.93805 0.84175 0.95597 0.91271 1.21965 1.00833 1.01348 0.96465 1.21426 0.92137 0.86989 0.94512 0.95433 1.22009 0.97561 1.01438 0.95883 1.21425 0.96332 0.96793 0.99778 1.22069 1.00164 0.97205 0.97917 1.19619 0.81353 0.95438 0.88363 0.95255 1.21745 1.27690 1.15196 0.95517 0.92871 1.25672 0.96562 0.96207 0.98378 1.70155 1.42537 1.30885 1.08861 0.85942 0.80166 0.79786 0.77739 1.20078 1.20972 1.19361 1.87753 1.35024 1.27265 1.80561 0.93049 0.93497 0.87923 0.94705 0.91324 0.92511 0.91733 0.90846 0.90751 0.93289 0.92579 0.92063 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.82 113.37 1.23 1.82 16 2 O -0.40 -13.85 9.72 -148.98 -1.45 -15.30 16 3 C 0.10 3.98 2.52 30.60 0.08 4.06 16 4 H 0.07 2.42 7.79 -2.39 -0.02 2.40 16 5 C -0.15 -5.91 9.38 71.98 0.68 -5.24 16 6 C 0.11 4.85 2.17 30.63 0.07 4.91 16 7 H 0.03 1.46 7.09 -2.39 -0.02 1.44 16 8 C -0.13 -4.93 5.24 30.69 0.16 -4.77 16 9 C -0.11 -4.01 5.77 30.72 0.18 -3.83 16 10 C -0.14 -5.65 5.59 30.68 0.17 -5.48 16 11 C 0.21 10.75 3.16 29.88 0.09 10.84 16 12 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 13 C -0.56 -31.04 6.59 25.60 0.17 -30.87 16 14 H 0.05 2.89 6.87 -2.91 -0.02 2.87 16 15 C 0.03 1.95 5.40 84.66 0.46 2.40 16 16 N -0.89 -52.01 12.84 21.45 0.28 -51.73 16 17 Si 0.94 44.22 29.54 68.60 2.03 46.25 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 O -0.39 -19.81 8.96 -148.98 -1.34 -21.15 16 22 H 0.05 1.07 8.09 -2.39 -0.02 1.06 16 23 H 0.05 1.02 7.87 -2.39 -0.02 1.00 16 24 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 2.21 7.87 -2.39 -0.02 2.19 16 27 H 0.06 2.56 7.68 -2.39 -0.02 2.54 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.07 2.56 7.76 -2.39 -0.02 2.54 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.05 2.03 6.86 -2.39 -0.02 2.01 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -62.15 272.20 3.84 -58.30 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.05 Total: 9.76 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 3.28 Total: -26.14 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.28 Total: -51.73 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -2.78 Total: -36.44 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -62.15 3.84 -58.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306637057.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.830 kcal (2) G-P(sol) polarization free energy of solvation -62.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds