Wall clock time and date at job start Mon Mar 30 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00179 * 2 1 4 4 H 1.09003 * 109.47058 * 29.99927 * 3 2 1 5 5 C 1.53002 * 109.47270 * 270.00280 * 3 2 1 6 6 C 1.52998 * 109.47450 * 150.00036 * 3 2 1 7 7 H 1.08997 * 110.67853 * 182.03341 * 6 3 2 8 8 C 1.54998 * 110.61705 * 305.00420 * 6 3 2 9 9 C 1.54817 * 102.12466 * 155.53959 * 8 6 3 10 10 C 1.54100 * 104.18606 * 339.09929 * 9 8 6 11 11 C 1.53005 * 109.87705 * 117.39548 * 10 9 8 12 12 C 1.50695 * 109.87716 * 238.54566 * 10 9 8 13 13 H 1.07993 * 120.00473 * 0.02562 * 12 10 9 14 14 C 1.37886 * 119.99891 * 180.02562 * 12 10 9 15 15 N 1.31515 * 119.99606 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00131 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46989 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47087 * 119.99468 * 16 14 12 19 19 H 1.48495 * 109.47346 * 239.99796 * 16 14 12 20 20 O 1.43746 * 107.29659 * 357.97343 * 10 9 8 21 21 H 1.08994 * 109.46888 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46981 * 299.99804 * 1 2 3 23 23 H 1.08999 * 109.46975 * 59.99775 * 1 2 3 24 24 H 1.09003 * 109.46792 * 299.99810 * 5 3 2 25 25 H 1.08997 * 109.47097 * 59.99759 * 5 3 2 26 26 H 1.09005 * 109.47246 * 179.97438 * 5 3 2 27 27 H 1.09002 * 110.90913 * 37.32174 * 8 6 3 28 28 H 1.08997 * 110.90321 * 273.75291 * 8 6 3 29 29 H 1.08991 * 110.48506 * 97.77523 * 9 8 6 30 30 H 1.08998 * 110.48536 * 220.42234 * 9 8 6 31 31 H 1.09002 * 109.46966 * 59.99739 * 11 10 9 32 32 H 1.08999 * 109.47103 * 179.97438 * 11 10 9 33 33 H 1.08999 * 109.46741 * 300.00016 * 11 10 9 34 34 H 0.97008 * 119.99432 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3590 1.2632 0.7212 7 1 3.8037 2.2574 0.7641 8 6 3.1976 0.6754 2.1463 9 6 4.6181 0.1326 2.4368 10 6 5.2513 -0.0341 1.0419 11 6 6.4679 0.8843 0.9097 12 6 5.6638 -1.4686 0.8345 13 1 5.4951 -2.1971 1.6137 14 6 6.2566 -1.8512 -0.3502 15 7 6.4615 -0.9641 -1.2993 16 14 6.7672 -3.6295 -0.6076 17 1 6.4290 -4.4216 0.6022 18 1 6.0478 -4.1861 -1.7814 19 1 8.2311 -3.6943 -0.8479 20 8 4.2545 0.3328 0.0734 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.8830 1.0774 -1.9563 25 1 1.2569 1.8015 -1.9563 26 1 2.6607 2.7674 -1.4425 27 1 2.4640 -0.1307 2.1538 28 1 2.9252 1.4535 2.8594 29 1 5.1861 0.8487 3.0305 30 1 4.5620 -0.8286 2.9477 31 1 7.2030 0.6254 1.6717 32 1 6.9107 0.7608 -0.0786 33 1 6.1569 1.9205 1.0421 34 1 6.8789 -1.2332 -2.1327 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306920116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:11 Heat of formation + Delta-G solvation = -95.546117 kcal Electronic energy + Delta-G solvation = -15570.689434 eV Core-core repulsion = 13082.795993 eV Total energy + Delta-G solvation = -2487.893440 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.76886 -37.01894 -32.99388 -31.27291 -30.75933 -28.90298 -26.35164 -25.40954 -24.58197 -21.53370 -19.99382 -19.14459 -16.76693 -16.22555 -15.06696 -14.86831 -14.38446 -14.21483 -13.40568 -13.00847 -12.78094 -12.34890 -12.25253 -11.96036 -11.68307 -11.17927 -11.12190 -10.82130 -10.67577 -10.53582 -10.34750 -10.16375 -9.97969 -9.72089 -9.39375 -9.02676 -8.94287 -8.40139 -7.82593 -5.85808 -3.99701 3.36544 3.44543 3.48285 4.25988 4.51431 4.98808 5.28276 5.47417 5.51196 5.58655 5.63593 5.78421 5.86183 5.89569 6.03068 6.14227 6.24131 6.29848 6.48529 6.63698 6.71061 6.85126 6.92384 6.98190 7.00386 7.22357 7.38807 7.75126 7.88292 8.22399 8.47356 8.71499 9.14170 9.69625 11.16890 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.030513 B = 0.010986 C = 0.010003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.433317 B = 2548.076008 C = 2798.529792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.098 3.902 4 H 0.054 0.946 5 C -0.168 4.168 6 C 0.066 3.934 7 H 0.057 0.943 8 C -0.145 4.145 9 C -0.140 4.140 10 C 0.224 3.776 11 C -0.149 4.149 12 C -0.516 4.516 13 H 0.060 0.940 14 C 0.079 3.921 15 N -0.862 5.862 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 O -0.327 6.327 21 H 0.080 0.920 22 H 0.033 0.967 23 H 0.033 0.967 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.008 0.992 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 5.147 3.041 10.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.040 3.960 4 H 0.072 0.928 5 C -0.226 4.226 6 C 0.007 3.993 7 H 0.075 0.925 8 C -0.183 4.183 9 C -0.178 4.178 10 C 0.187 3.813 11 C -0.207 4.207 12 C -0.554 4.554 13 H 0.078 0.922 14 C -0.126 4.126 15 N -0.499 5.499 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 O -0.247 6.247 21 H 0.098 0.902 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.109 0.891 33 H 0.027 0.973 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.035 4.923 2.641 9.787 hybrid contribution 0.026 -0.559 0.023 0.560 sum -8.010 4.365 2.664 9.503 Atomic orbital electron populations 1.22732 0.83007 1.02118 0.98955 1.88165 1.17612 1.27283 1.94777 1.22119 0.93791 0.84270 0.95796 0.92798 1.22165 1.01447 1.01812 0.97136 1.23018 0.89990 0.94710 0.91561 0.92504 1.23037 0.98854 1.00026 0.96397 1.23048 0.94484 0.99943 1.00339 1.19648 0.85099 0.94152 0.82440 1.22183 0.99483 0.95121 1.03915 1.21098 1.39511 0.93188 1.01562 0.92198 1.25010 0.94691 0.96987 0.95880 1.69965 1.41537 1.32941 1.05444 0.86614 0.77913 0.85625 0.78237 1.19786 1.20962 1.21124 1.89336 1.39762 1.59457 1.36098 0.90156 0.94838 0.94804 0.90074 0.93732 0.92319 0.90687 0.92999 0.93265 0.91777 0.94792 0.89105 0.97305 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.82 101.05 1.09 1.50 16 2 O -0.36 -7.03 9.25 -42.91 -0.40 -7.43 16 3 C 0.10 1.77 2.68 -26.73 -0.07 1.70 16 4 H 0.05 0.81 7.79 -51.93 -0.40 0.40 16 5 C -0.17 -2.91 9.40 37.16 0.35 -2.56 16 6 C 0.07 1.38 3.13 -25.68 -0.08 1.30 16 7 H 0.06 1.13 8.12 -51.93 -0.42 0.70 16 8 C -0.15 -2.85 6.53 -24.72 -0.16 -3.01 16 9 C -0.14 -3.09 6.26 -25.20 -0.16 -3.25 16 10 C 0.22 5.83 0.74 -91.20 -0.07 5.77 16 11 C -0.15 -3.74 8.39 37.16 0.31 -3.43 16 12 C -0.52 -14.76 8.26 -34.44 -0.28 -15.05 16 13 H 0.06 1.70 7.33 -52.49 -0.38 1.31 16 14 C 0.08 2.26 5.26 -17.82 -0.09 2.17 16 15 N -0.86 -25.39 10.93 55.43 0.61 -24.78 16 16 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 O -0.33 -8.66 9.45 -42.91 -0.41 -9.06 16 21 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.03 0.41 8.09 -51.93 -0.42 -0.01 16 23 H 0.03 0.42 7.87 -51.93 -0.41 0.01 16 24 H 0.08 1.70 7.76 -51.93 -0.40 1.29 16 25 H 0.04 0.66 7.87 -51.93 -0.41 0.25 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.52 7.23 -51.93 -0.38 1.14 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.98 7.69 -51.93 -0.40 0.59 16 30 H 0.06 1.42 7.40 -51.93 -0.38 1.03 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 2.51 6.00 -51.93 -0.31 2.20 16 33 H 0.01 0.18 8.11 -51.93 -0.42 -0.24 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 274.11 15.07 4.13 4.13 Total: -1.00 -31.19 274.11 -5.82 -37.00 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.57 Total: -1.90 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 0.84 Total: -14.86 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.61 Total: -24.78 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.80 Total: -16.49 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.19 -5.82 -37.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306920116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.542 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds