Wall clock time and date at job start Mon Mar 30 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00179 * 2 1 4 4 H 1.09003 * 109.47058 * 29.99927 * 3 2 1 5 5 C 1.53002 * 109.47270 * 270.00280 * 3 2 1 6 6 C 1.52998 * 109.47450 * 150.00036 * 3 2 1 7 7 H 1.08997 * 110.67853 * 182.03341 * 6 3 2 8 8 C 1.54998 * 110.61705 * 305.00420 * 6 3 2 9 9 C 1.54817 * 102.12466 * 155.53959 * 8 6 3 10 10 C 1.54100 * 104.18606 * 339.09929 * 9 8 6 11 11 C 1.53005 * 109.87705 * 117.39548 * 10 9 8 12 12 C 1.50695 * 109.87716 * 238.54566 * 10 9 8 13 13 H 1.07993 * 120.00473 * 0.02562 * 12 10 9 14 14 C 1.37886 * 119.99891 * 180.02562 * 12 10 9 15 15 N 1.31515 * 119.99606 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00131 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46989 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47087 * 119.99468 * 16 14 12 19 19 H 1.48495 * 109.47346 * 239.99796 * 16 14 12 20 20 O 1.43746 * 107.29659 * 357.97343 * 10 9 8 21 21 H 1.08994 * 109.46888 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46981 * 299.99804 * 1 2 3 23 23 H 1.08999 * 109.46975 * 59.99775 * 1 2 3 24 24 H 1.09003 * 109.46792 * 299.99810 * 5 3 2 25 25 H 1.08997 * 109.47097 * 59.99759 * 5 3 2 26 26 H 1.09005 * 109.47246 * 179.97438 * 5 3 2 27 27 H 1.09002 * 110.90913 * 37.32174 * 8 6 3 28 28 H 1.08997 * 110.90321 * 273.75291 * 8 6 3 29 29 H 1.08991 * 110.48506 * 97.77523 * 9 8 6 30 30 H 1.08998 * 110.48536 * 220.42234 * 9 8 6 31 31 H 1.09002 * 109.46966 * 59.99739 * 11 10 9 32 32 H 1.08999 * 109.47103 * 179.97438 * 11 10 9 33 33 H 1.08999 * 109.46741 * 300.00016 * 11 10 9 34 34 H 0.97008 * 119.99432 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3590 1.2632 0.7212 7 1 3.8037 2.2574 0.7641 8 6 3.1976 0.6754 2.1463 9 6 4.6181 0.1326 2.4368 10 6 5.2513 -0.0341 1.0419 11 6 6.4679 0.8843 0.9097 12 6 5.6638 -1.4686 0.8345 13 1 5.4951 -2.1971 1.6137 14 6 6.2566 -1.8512 -0.3502 15 7 6.4615 -0.9641 -1.2993 16 14 6.7672 -3.6295 -0.6076 17 1 6.4290 -4.4216 0.6022 18 1 6.0478 -4.1861 -1.7814 19 1 8.2311 -3.6943 -0.8479 20 8 4.2545 0.3328 0.0734 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.8830 1.0774 -1.9563 25 1 1.2569 1.8015 -1.9563 26 1 2.6607 2.7674 -1.4425 27 1 2.4640 -0.1307 2.1538 28 1 2.9252 1.4535 2.8594 29 1 5.1861 0.8487 3.0305 30 1 4.5620 -0.8286 2.9477 31 1 7.2030 0.6254 1.6717 32 1 6.9107 0.7608 -0.0786 33 1 6.1569 1.9205 1.0421 34 1 6.8789 -1.2332 -2.1327 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306920116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:10 Heat of formation + Delta-G solvation = -115.794309 kcal Electronic energy + Delta-G solvation = -15571.567461 eV Core-core repulsion = 13082.795993 eV Total energy + Delta-G solvation = -2488.771468 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.40751 -38.51830 -34.96341 -32.92869 -32.51373 -30.65959 -27.57016 -27.37548 -26.33732 -23.10841 -21.57640 -20.98364 -18.71548 -17.69753 -16.78161 -16.44132 -16.03367 -15.72285 -15.19156 -14.76488 -14.37922 -13.95245 -13.79101 -13.45622 -13.27832 -13.11988 -12.80535 -12.49629 -12.47012 -12.24592 -12.08150 -11.83784 -11.70472 -11.39314 -11.17129 -10.85378 -10.55147 -10.36602 -9.73048 -8.00136 -6.21167 1.39607 1.41969 1.52677 2.45242 3.01602 3.12862 3.63473 3.88822 4.12817 4.23287 4.31840 4.42370 4.54822 4.62270 4.66600 4.73265 4.83119 4.87784 4.91675 4.95852 5.06209 5.11780 5.12530 5.31543 5.40801 5.46512 5.51009 5.70460 6.18399 6.40698 6.49716 6.68893 7.17470 7.52325 9.01184 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.030513 B = 0.010986 C = 0.010003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.433317 B = 2548.076008 C = 2798.529792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.098 3.902 4 H 0.095 0.905 5 C -0.162 4.162 6 C 0.054 3.946 7 H 0.068 0.932 8 C -0.133 4.133 9 C -0.139 4.139 10 C 0.208 3.792 11 C -0.141 4.141 12 C -0.539 4.539 13 H 0.051 0.949 14 C 0.030 3.970 15 N -0.889 5.889 16 Si 0.949 3.051 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.276 1.276 20 O -0.365 6.365 21 H 0.085 0.915 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.033 0.967 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.566 5.896 3.986 11.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.041 3.959 4 H 0.112 0.888 5 C -0.220 4.220 6 C -0.005 4.005 7 H 0.086 0.914 8 C -0.171 4.171 9 C -0.176 4.176 10 C 0.171 3.829 11 C -0.199 4.199 12 C -0.577 4.577 13 H 0.069 0.931 14 C -0.172 4.172 15 N -0.527 5.527 16 Si 0.775 3.225 17 H -0.192 1.192 18 H -0.211 1.211 19 H -0.201 1.201 20 O -0.285 6.285 21 H 0.104 0.896 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.388 5.675 3.597 11.545 hybrid contribution 0.384 -0.753 -0.260 0.884 sum -9.004 4.922 3.338 10.791 Atomic orbital electron populations 1.22958 0.80410 1.03217 1.00753 1.88109 1.20628 1.28348 1.95035 1.22186 0.93033 0.84755 0.95967 0.88776 1.22102 1.01772 1.01234 0.96887 1.23381 0.90663 0.94121 0.92328 0.91435 1.22967 0.96881 1.00676 0.96568 1.22965 0.96205 1.00273 0.98204 1.19744 0.85769 0.92891 0.84541 1.22043 0.99361 0.96357 1.02118 1.21480 1.39807 0.94884 1.01523 0.93058 1.25742 0.94891 1.00792 0.95743 1.70109 1.42291 1.34576 1.05694 0.85669 0.77855 0.81048 0.77969 1.19219 1.21135 1.20121 1.89254 1.40770 1.61103 1.37358 0.89606 0.92555 0.93315 0.94766 0.91232 0.90799 0.91650 0.89001 0.91264 0.92763 0.94375 0.92248 0.95231 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 10.82 113.37 1.23 1.81 16 2 O -0.40 -15.09 9.25 -141.64 -1.31 -16.40 16 3 C 0.10 3.31 2.68 30.59 0.08 3.40 16 4 H 0.09 2.41 7.79 -2.39 -0.02 2.39 16 5 C -0.16 -5.40 9.40 71.98 0.68 -4.72 16 6 C 0.05 2.14 3.13 31.28 0.10 2.24 16 7 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16 8 C -0.13 -4.90 6.53 31.90 0.21 -4.69 16 9 C -0.14 -5.92 6.26 31.59 0.20 -5.72 16 10 C 0.21 10.87 0.74 -11.17 -0.01 10.86 16 11 C -0.14 -7.08 8.39 71.98 0.60 -6.47 16 12 C -0.54 -31.38 8.26 25.60 0.21 -31.16 16 13 H 0.05 2.96 7.33 -2.91 -0.02 2.94 16 14 C 0.03 1.75 5.26 84.66 0.45 2.20 16 15 N -0.89 -53.71 10.93 21.45 0.23 -53.48 16 16 Si 0.95 45.74 29.54 68.60 2.03 47.76 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 O -0.37 -19.45 9.45 -141.64 -1.34 -20.79 16 21 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.06 1.16 8.09 -2.39 -0.02 1.15 16 23 H 0.05 1.08 7.87 -2.39 -0.02 1.06 16 24 H 0.03 1.44 7.76 -2.39 -0.02 1.42 16 25 H 0.07 1.91 7.87 -2.39 -0.02 1.89 16 26 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 27 H 0.06 2.52 7.23 -2.39 -0.02 2.50 16 28 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.07 2.62 7.69 -2.39 -0.02 2.60 16 30 H 0.05 2.37 7.40 -2.39 -0.02 2.35 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 3.35 6.00 -2.39 -0.01 3.34 16 33 H 0.03 1.30 8.11 -2.39 -0.02 1.28 16 34 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -68.54 274.11 4.40 -64.14 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.05 Total: 11.04 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: 3.74 Total: -32.28 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.23 Total: -53.48 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -2.65 Total: -37.19 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -68.54 4.40 -64.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306920116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.657 kcal (2) G-P(sol) polarization free energy of solvation -68.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds