Wall clock time and date at job start Mon Mar 30 2020 03:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30700 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48493 * 109.47158 * 269.99943 * 3 2 1 5 5 H 1.48507 * 109.47087 * 29.99954 * 3 2 1 6 6 H 1.48501 * 109.47116 * 149.99760 * 3 2 1 7 7 C 1.40242 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.39910 * 120.00346 * 0.02562 * 7 2 1 10 10 N 1.31861 * 125.55699 * 179.97438 * 9 7 2 11 11 C 1.30462 * 115.68932 * 180.02562 * 10 9 7 12 12 C 1.50698 * 122.10401 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47089 * 304.97461 * 12 11 10 14 14 S 1.81399 * 109.47206 * 179.97438 * 13 12 11 15 15 C 1.34854 * 115.79391 * 359.97438 * 11 10 9 16 16 S 1.71043 * 109.23637 * 0.02562 * 15 11 10 17 17 H 0.96992 * 120.00174 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.46655 * 64.97163 * 12 11 10 19 19 H 1.08993 * 109.47116 * 184.97134 * 12 11 10 20 20 H 1.09004 * 109.46959 * 299.99923 * 13 12 11 21 21 H 1.08998 * 109.47187 * 59.99437 * 13 12 11 22 22 H 1.34495 * 103.00310 * 179.97438 * 14 13 12 23 23 H 1.07996 * 125.38425 * 180.02562 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4884 2.0465 -1.4000 5 1 1.4383 2.6527 0.7001 6 1 3.5385 1.4403 0.7001 7 6 2.0083 -1.2145 0.0005 8 1 3.0883 -1.2144 0.0001 9 6 1.3088 -2.4262 0.0005 10 7 1.8546 -3.6266 0.0005 11 6 1.0184 -4.6280 0.0000 12 6 1.4849 -6.0610 0.0005 13 6 2.4299 -6.2900 -1.1808 14 16 2.9921 -8.0147 -1.1798 15 6 -0.2897 -4.3002 0.0001 16 16 -0.4438 -2.5967 0.0002 17 1 -0.4850 0.8400 0.0004 18 1 2.0101 -6.2717 0.9321 19 1 0.6240 -6.7234 -0.0891 20 1 1.9047 -6.0792 -2.1124 21 1 3.2908 -5.6275 -1.0911 22 1 3.8004 -8.0702 -2.2533 23 1 -1.1103 -5.0023 0.0001 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307167277.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:07 Heat of formation + Delta-G solvation = 7.272848 kcal Electronic energy + Delta-G solvation = -10027.063897 eV Core-core repulsion = 8092.042664 eV Total energy + Delta-G solvation = -1935.021233 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 215.013 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.86633 -34.30679 -32.42224 -28.84462 -26.46301 -23.75387 -21.73971 -18.10218 -17.69017 -16.98309 -15.64729 -15.20089 -14.45075 -14.12560 -13.39769 -12.88684 -12.27171 -12.12473 -11.79128 -11.54822 -11.34605 -10.87240 -10.57532 -10.42544 -10.12530 -9.64653 -9.36547 -7.90637 -7.85944 -7.76395 -7.14135 -7.10460 -4.77255 1.87814 2.50833 2.91197 2.96055 2.97615 3.02685 3.52148 3.66515 4.04591 4.07574 5.03883 5.40529 5.56879 5.83875 6.06095 6.36905 6.50463 6.74016 6.79204 7.24918 7.57032 7.86940 8.28865 8.40393 9.71669 9.79907 Molecular weight = 215.01amu Principal moments of inertia in cm(-1) A = 0.052122 B = 0.007572 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.076952 B = 3696.737430 C = 4162.216276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.055 3.945 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.375 4.375 8 H 0.103 0.897 9 C 0.206 3.794 10 N -0.600 5.600 11 C 0.111 3.889 12 C -0.020 4.020 13 C -0.042 4.042 14 S -0.274 6.274 15 C -0.460 4.460 16 S 0.101 5.899 17 H 0.298 0.702 18 H 0.074 0.926 19 H 0.072 0.928 20 H 0.078 0.922 21 H 0.093 0.907 22 H 0.083 0.917 23 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 -2.265 -1.347 2.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.168 4.168 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.417 4.417 8 H 0.120 0.880 9 C -0.047 4.047 10 N -0.323 5.323 11 C -0.031 4.031 12 C -0.062 4.062 13 C -0.191 4.191 14 S -0.123 6.123 15 C -0.604 4.604 16 S 0.359 5.641 17 H 0.111 0.889 18 H 0.093 0.907 19 H 0.090 0.910 20 H 0.097 0.903 21 H 0.112 0.888 22 H 0.046 0.954 23 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.927 -2.336 -1.170 2.772 hybrid contribution 0.806 0.584 -0.948 1.375 sum 1.734 -1.752 -2.119 3.250 Atomic orbital electron populations 1.68816 1.07722 1.30874 1.33318 1.26188 0.95110 1.02666 0.92817 0.85722 0.80043 0.78200 0.79596 1.18968 1.19700 1.18047 1.18986 0.95724 0.87411 1.39591 0.87958 1.23917 0.91269 0.94087 0.95417 1.67213 1.34952 0.97175 1.32944 1.19434 0.89015 0.93924 1.00771 1.19745 0.97428 0.92582 0.96405 1.23136 1.03060 0.89909 1.02992 1.87265 1.62833 1.20881 1.41297 1.25799 0.99441 1.04022 1.31188 1.84200 1.11687 0.94781 1.73393 0.88889 0.90726 0.90961 0.90347 0.88818 0.95360 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.47 10.67 55.56 0.59 -17.88 14 2 C 0.05 1.27 5.50 -17.28 -0.10 1.17 14 3 Si 0.94 17.19 29.56 -169.99 -5.03 12.16 14 4 H -0.26 -4.77 7.11 56.52 0.40 -4.36 14 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 14 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 14 7 C -0.37 -9.57 9.45 -38.20 -0.36 -9.93 14 8 H 0.10 2.52 7.85 -52.49 -0.41 2.11 14 9 C 0.21 5.55 7.14 -16.91 -0.12 5.43 14 10 N -0.60 -15.78 10.44 -9.33 -0.10 -15.88 14 11 C 0.11 2.64 6.05 -84.38 -0.51 2.13 14 12 C -0.02 -0.39 5.70 -27.88 -0.16 -0.55 14 13 C -0.04 -0.73 6.19 37.16 0.23 -0.50 14 14 S -0.27 -4.18 25.88 -107.50 -2.78 -6.96 14 15 C -0.46 -11.09 10.78 29.53 0.32 -10.78 14 16 S 0.10 2.55 20.19 -107.50 -2.17 0.38 14 17 H 0.30 6.31 8.29 -40.82 -0.34 5.97 14 18 H 0.07 1.40 8.14 -51.93 -0.42 0.98 14 19 H 0.07 1.27 8.01 -51.93 -0.42 0.85 14 20 H 0.08 1.36 8.14 -51.92 -0.42 0.93 14 21 H 0.09 1.74 8.05 -51.92 -0.42 1.32 14 22 H 0.08 1.15 9.07 97.61 0.89 2.03 14 23 H 0.13 2.84 8.06 -52.49 -0.42 2.41 14 LS Contribution 234.48 15.07 3.53 3.53 Total: -1.00 -26.67 234.48 -7.41 -34.08 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -0.76 Total: 3.57 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -0.70 Total: -13.02 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.50 Total: -33.75 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -4.95 Total: -6.58 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -26.67 -7.41 -34.08 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307167277.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.355 kcal (2) G-P(sol) polarization free energy of solvation -26.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds