Wall clock time and date at job start Mon Mar 30 2020 03:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47008 * 2 1 4 4 C 1.50703 * 109.47422 * 119.99376 * 2 1 3 5 5 H 1.08003 * 119.99652 * 119.99441 * 4 2 1 6 6 C 1.37874 * 120.00171 * 300.00793 * 4 2 1 7 7 N 1.31518 * 120.00174 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00162 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47176 * 89.99284 * 8 6 4 10 10 H 1.48499 * 109.47314 * 209.99859 * 8 6 4 11 11 H 1.48502 * 109.46743 * 329.99816 * 8 6 4 12 12 N 1.46894 * 109.47213 * 239.99924 * 2 1 3 13 13 C 1.47690 * 111.00037 * 291.91217 * 12 2 1 14 14 C 1.50775 * 108.09831 * 151.97907 * 13 12 2 15 15 N 1.47748 * 111.91223 * 94.61180 * 14 13 12 16 16 C 1.48062 * 113.78810 * 318.88266 * 15 14 13 17 17 C 1.50743 * 112.94112 * 318.28399 * 16 15 14 18 18 H 1.09000 * 109.64973 * 332.75592 * 17 16 15 19 19 O 1.42903 * 109.55867 * 212.48906 * 17 16 15 20 20 C 1.40082 * 111.00271 * 163.27324 * 12 2 1 21 21 H 1.08999 * 109.47285 * 66.02945 * 1 2 3 22 22 H 1.08998 * 109.46884 * 186.02848 * 1 2 3 23 23 H 1.09000 * 109.47158 * 306.02813 * 1 2 3 24 24 H 0.96992 * 119.99952 * 180.02562 * 7 6 4 25 25 H 1.09008 * 109.73186 * 32.33051 * 13 12 2 26 26 H 1.08998 * 109.77861 * 271.65564 * 13 12 2 27 27 H 1.09004 * 108.99515 * 215.24571 * 14 13 12 28 28 H 1.09001 * 108.98992 * 333.99239 * 14 13 12 29 29 H 1.00899 * 110.99709 * 84.94836 * 15 14 13 30 30 H 1.09011 * 108.78911 * 197.39388 * 16 15 14 31 31 H 1.08999 * 108.70246 * 79.11632 * 16 15 14 32 32 H 0.96705 * 114.00363 * 60.53461 * 19 17 16 33 33 H 1.09003 * 109.07223 * 308.67556 * 20 12 2 34 34 H 1.09008 * 109.07303 * 67.69915 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3214 -1.1200 4.0080 9 1 3.6298 -0.5455 4.4124 10 1 1.3432 -0.9490 5.1121 11 1 2.4860 -2.5659 3.7120 12 7 2.0197 -0.6925 -1.1994 13 6 1.7110 -2.1356 -1.1405 14 6 1.5774 -2.6440 -2.5536 15 7 2.8432 -3.2178 -3.0551 16 6 4.0437 -2.4381 -2.6765 17 6 3.8400 -0.9495 -2.7984 18 1 3.0854 -0.7438 -3.5575 19 8 5.0721 -0.3267 -3.1676 20 6 3.3678 -0.3945 -1.4359 21 1 -0.3634 0.4175 -0.9390 22 1 -0.3633 -1.0220 0.1079 23 1 -0.3633 0.6045 0.8311 24 1 0.7094 1.1618 3.4843 25 1 0.7749 -2.2901 -0.6036 26 1 2.5177 -2.6649 -0.6335 27 1 0.8038 -3.4114 -2.5829 28 1 1.2811 -1.8187 -3.2010 29 1 2.9371 -4.1835 -2.7783 30 1 4.8717 -2.7332 -3.3213 31 1 4.3022 -2.6737 -1.6442 32 1 5.4272 -0.6288 -4.0149 33 1 3.5004 0.6875 -1.4267 34 1 3.9741 -0.8342 -0.6439 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307270908.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:26 Heat of formation + Delta-G solvation = -59.109764 kcal Electronic energy + Delta-G solvation = -15496.756701 eV Core-core repulsion = 13042.736011 eV Total energy + Delta-G solvation = -2454.020690 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.76038 -37.83982 -36.31827 -34.54225 -32.04239 -30.96867 -27.56863 -27.14856 -26.30455 -22.81373 -21.48900 -21.22040 -18.68859 -18.08853 -17.16076 -16.72810 -16.59906 -16.12811 -15.76590 -15.16700 -14.65973 -14.25997 -13.89462 -13.52879 -13.40981 -12.99733 -12.88972 -12.68871 -12.49182 -12.34035 -12.31979 -12.00238 -11.74575 -11.36167 -11.16175 -10.93457 -10.55125 -9.43012 -8.95198 -8.11313 -6.32656 1.33088 1.34837 1.43555 2.34896 2.84352 3.09995 3.28103 3.68969 3.84634 3.96545 4.24702 4.36250 4.44850 4.49444 4.71375 4.80342 4.84530 4.91289 5.03691 5.11515 5.13844 5.22153 5.34472 5.46419 5.66671 5.92151 5.97001 6.11416 6.30480 6.47986 6.75519 6.85843 6.92440 7.38388 8.86551 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.034445 B = 0.009532 C = 0.009288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.695642 B = 2936.757789 C = 3013.834666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.215 3.785 3 H 0.001 0.999 4 C -0.552 4.552 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.949 3.051 9 H -0.280 1.280 10 H -0.278 1.278 11 H -0.272 1.272 12 N -0.544 5.544 13 C 0.049 3.951 14 C 0.065 3.935 15 N -0.687 5.687 16 C 0.038 3.962 17 C 0.118 3.882 18 H 0.072 0.928 19 O -0.577 6.577 20 C 0.093 3.907 21 H 0.033 0.967 22 H 0.032 0.968 23 H 0.056 0.944 24 H 0.264 0.736 25 H 0.071 0.929 26 H 0.016 0.984 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.352 0.648 30 H 0.099 0.901 31 H 0.013 0.987 32 H 0.398 0.602 33 H 0.049 0.951 34 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -7.341 -10.066 12.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 H 0.019 0.981 4 C -0.591 4.591 5 H 0.063 0.937 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.775 3.225 9 H -0.206 1.206 10 H -0.203 1.203 11 H -0.197 1.197 12 N -0.268 5.268 13 C -0.080 4.080 14 C -0.065 4.065 15 N -0.320 5.320 16 C -0.091 4.091 17 C 0.058 3.942 18 H 0.090 0.910 19 O -0.385 6.385 20 C -0.038 4.038 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.034 0.966 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.170 0.830 30 H 0.117 0.883 31 H 0.032 0.968 32 H 0.249 0.751 33 H 0.067 0.933 34 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 2.795 -6.419 -10.349 12.494 hybrid contribution 0.935 -0.867 2.434 2.748 sum 3.730 -7.285 -7.915 11.385 Atomic orbital electron populations 1.21555 0.96554 0.99628 0.99209 1.19109 0.93159 0.92137 0.84765 0.98127 1.21852 1.31810 1.12712 0.92747 0.93741 1.25626 0.95047 0.95563 1.01610 1.70005 1.37056 1.23659 1.24189 0.85704 0.78138 0.79005 0.79674 1.20605 1.20329 1.19659 1.59410 1.16985 1.10650 1.39795 1.22268 1.00230 0.87463 0.98010 1.21910 0.91605 1.00236 0.92735 1.60469 1.01073 1.06197 1.64224 1.22357 0.93961 0.93798 0.98992 1.21386 0.86159 0.90811 0.95854 0.91020 1.86453 1.39289 1.68133 1.44618 1.20580 0.89377 0.99504 0.94302 0.94791 0.94858 0.92515 0.92716 0.91098 0.96582 0.89005 0.90609 0.82989 0.88324 0.96818 0.75109 0.93256 0.98505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.37 8.79 71.98 0.63 -4.74 16 2 C 0.21 11.00 2.24 44.17 0.10 11.10 16 3 H 0.00 0.04 7.72 -2.39 -0.02 0.03 16 4 C -0.55 -30.33 7.31 25.60 0.19 -30.15 16 5 H 0.04 2.47 6.49 -2.91 -0.02 2.45 16 6 C 0.02 1.21 5.30 84.65 0.45 1.66 16 7 N -0.91 -52.21 11.39 21.45 0.24 -51.97 16 8 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 N -0.54 -23.33 3.89 -891.32 -3.46 -26.80 16 13 C 0.05 1.85 4.05 85.43 0.35 2.20 16 14 C 0.06 1.86 6.10 85.42 0.52 2.38 16 15 N -0.69 -17.40 6.94 -516.84 -3.58 -20.99 16 16 C 0.04 1.05 5.75 85.35 0.49 1.54 16 17 C 0.12 3.75 3.22 30.38 0.10 3.85 16 18 H 0.07 2.28 7.20 -2.39 -0.02 2.26 16 19 O -0.58 -16.71 13.27 -148.98 -1.98 -18.69 16 20 C 0.09 3.90 4.44 88.05 0.39 4.29 16 21 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.03 1.53 6.55 -2.39 -0.02 1.51 16 23 H 0.06 3.01 6.26 -2.39 -0.01 3.00 16 24 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 25 H 0.07 2.85 5.99 -2.38 -0.01 2.83 16 26 H 0.02 0.65 6.03 -2.39 -0.01 0.63 16 27 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.08 2.33 7.20 -2.39 -0.02 2.31 16 29 H 0.35 7.55 8.91 -89.69 -0.80 6.75 16 30 H 0.10 2.17 7.86 -2.38 -0.02 2.15 16 31 H 0.01 0.44 6.51 -2.39 -0.02 0.42 16 32 H 0.40 6.96 8.94 -74.05 -0.66 6.30 16 33 H 0.05 2.23 7.76 -2.39 -0.02 2.22 16 34 H 0.00 -0.15 7.07 -2.38 -0.02 -0.16 16 Total: -1.00 -62.07 258.63 -3.89 -65.96 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -0.35 Total: 14.47 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 3.21 Total: -7.86 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -6.80 Total: -99.75 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -1.98 Total: -18.69 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -62.07 -3.89 -65.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307270908.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.852 kcal (2) G-P(sol) polarization free energy of solvation -62.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds