Wall clock time and date at job start Mon Mar 30 2020 03:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46829 * 2 1 4 4 C 1.50699 * 109.47286 * 239.99334 * 2 1 3 5 5 H 1.07996 * 119.99820 * 239.99905 * 4 2 1 6 6 C 1.37881 * 119.99855 * 59.99966 * 4 2 1 7 7 N 1.31514 * 119.99602 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00088 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47089 * 90.00091 * 8 6 4 10 10 H 1.48491 * 109.47297 * 210.00371 * 8 6 4 11 11 H 1.48509 * 109.46988 * 330.00295 * 8 6 4 12 12 N 1.46898 * 109.46719 * 119.99439 * 2 1 3 13 13 C 1.40017 * 111.00151 * 289.45704 * 12 2 1 14 14 C 1.54205 * 112.08511 * 188.09981 * 13 12 2 15 15 N 1.44580 * 108.84543 * 281.18244 * 14 13 12 16 16 C 1.48060 * 113.85439 * 94.23438 * 15 14 13 17 17 C 1.53700 * 112.46703 * 318.31080 * 16 15 14 18 18 H 1.09001 * 108.95430 * 79.14864 * 17 16 15 19 19 O 1.42902 * 108.95313 * 197.87955 * 17 16 15 20 20 C 1.47908 * 111.00595 * 57.42783 * 12 2 1 21 21 H 1.09004 * 109.47166 * 174.04485 * 1 2 3 22 22 H 1.09003 * 109.47256 * 54.04620 * 1 2 3 23 23 H 1.09005 * 109.47255 * 294.04154 * 1 2 3 24 24 H 0.97004 * 119.99515 * 180.02562 * 7 6 4 25 25 H 1.09000 * 108.95613 * 308.76745 * 13 12 2 26 26 H 1.08997 * 108.95781 * 67.51216 * 13 12 2 27 27 H 1.08994 * 109.57446 * 40.98979 * 14 13 12 28 28 H 1.09001 * 109.57331 * 161.24856 * 14 13 12 29 29 H 1.00896 * 111.00024 * 328.11109 * 15 14 13 30 30 H 1.08993 * 108.88587 * 79.08538 * 16 15 14 31 31 H 1.09006 * 108.88095 * 197.64427 * 16 15 14 32 32 H 0.96699 * 114.00246 * 299.99994 * 19 17 16 33 33 H 1.09002 * 109.63471 * 273.49525 * 20 12 2 34 34 H 1.09004 * 109.62522 * 34.08294 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 1.3449 -2.1619 -4.4122 10 1 2.4874 -0.1407 -5.1119 11 1 3.6310 -1.7569 -3.7117 12 7 2.0196 -0.6924 1.1995 13 6 1.7763 0.0660 2.3511 14 6 2.4539 -0.5386 3.5974 15 7 1.6549 -1.6460 4.0724 16 6 2.0888 -2.9632 3.5538 17 6 2.4602 -2.9143 2.0632 18 1 3.4612 -2.4950 1.9613 19 8 2.4593 -4.2444 1.5407 20 6 1.4954 -2.0739 1.2653 21 1 -0.3634 -1.0221 -0.1066 22 1 -0.3634 0.6034 -0.8319 23 1 -0.3634 0.4187 0.9385 24 1 0.7089 1.1610 -3.4845 25 1 2.1558 1.0760 2.1966 26 1 0.7010 0.1144 2.5226 27 1 3.4505 -0.8934 3.3352 28 1 2.5295 0.2202 4.3762 29 1 0.6751 -1.4900 3.8888 30 1 2.9561 -3.2981 4.1227 31 1 1.2793 -3.6803 3.6908 32 1 3.0857 -4.8385 1.9763 33 1 0.5205 -2.0729 1.7530 34 1 1.4035 -2.4790 0.2575 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307270909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:29 Heat of formation + Delta-G solvation = -36.170568 kcal Electronic energy + Delta-G solvation = -15515.873552 eV Core-core repulsion = 13062.847579 eV Total energy + Delta-G solvation = -2453.025972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.38210 -36.41984 -35.04085 -32.56041 -30.47089 -29.11560 -25.62129 -25.42975 -24.92548 -21.63276 -20.37491 -19.25915 -16.91775 -16.18140 -15.92132 -15.38236 -14.93066 -14.58426 -13.85821 -13.31419 -13.15148 -12.85747 -12.29344 -12.08600 -11.74390 -11.61891 -11.20590 -10.96322 -10.78397 -10.67053 -10.52519 -10.35633 -10.05300 -9.90803 -9.55732 -8.93877 -8.41194 -8.10309 -7.20434 -6.02495 -4.05563 3.31696 3.37947 3.42895 4.28906 4.42153 4.54008 5.06550 5.14814 5.29141 5.29872 5.53104 5.59782 5.76218 5.83275 5.90735 6.17403 6.32253 6.38675 6.45488 6.63559 6.77698 6.83593 7.07529 7.22892 7.49576 7.52552 7.65401 7.85984 7.95701 8.13663 8.31139 8.66335 9.00243 9.59579 11.04946 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036882 B = 0.010066 C = 0.008510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.996003 B = 2781.046139 C = 3289.598995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.218 3.782 3 H 0.040 0.960 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.546 5.546 13 C 0.039 3.961 14 C 0.060 3.940 15 N -0.692 5.692 16 C 0.032 3.968 17 C 0.075 3.925 18 H 0.064 0.936 19 O -0.566 6.566 20 C 0.076 3.924 21 H 0.030 0.970 22 H 0.085 0.915 23 H 0.006 0.994 24 H 0.260 0.740 25 H 0.070 0.930 26 H 0.015 0.985 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.341 0.659 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.369 0.631 33 H 0.025 0.975 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 -4.773 10.032 11.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.113 3.887 3 H 0.058 0.942 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.271 5.271 13 C -0.093 4.093 14 C -0.070 4.070 15 N -0.323 5.323 16 C -0.098 4.098 17 C 0.014 3.986 18 H 0.082 0.918 19 O -0.369 6.369 20 C -0.052 4.052 21 H 0.049 0.951 22 H 0.104 0.896 23 H 0.025 0.975 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.033 0.967 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.159 0.841 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.215 0.785 33 H 0.043 0.957 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.975 -4.501 10.020 11.160 hybrid contribution -0.495 -0.437 -1.312 1.468 sum 1.481 -4.938 8.708 10.120 Atomic orbital electron populations 1.22381 1.00613 1.00289 0.99374 1.19294 0.89767 0.94204 0.85443 0.94202 1.21123 1.30721 1.12500 0.89632 0.91853 1.24926 0.95192 0.95088 0.99040 1.69899 1.37089 1.22994 1.23439 0.86512 0.79329 0.79255 0.82430 1.20777 1.21318 1.19833 1.59265 1.62475 1.01680 1.03639 1.21640 0.97268 0.98364 0.91983 1.22007 0.97596 0.92682 0.94708 1.59678 1.07818 1.01874 1.62910 1.23080 1.01147 0.91540 0.94007 1.22513 1.00928 0.82845 0.92268 0.91831 1.86602 1.65057 1.21886 1.63335 1.21499 0.93043 0.88859 1.01772 0.95100 0.89587 0.97465 0.93008 0.91167 0.96727 0.90794 0.90879 0.84061 0.91595 0.91105 0.78531 0.95702 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 8.31 37.16 0.31 -3.73 16 2 C 0.22 5.44 2.27 -68.87 -0.16 5.29 16 3 H 0.04 1.09 7.84 -51.93 -0.41 0.68 16 4 C -0.50 -13.75 7.58 -34.44 -0.26 -14.01 16 5 H 0.06 1.78 7.18 -52.49 -0.38 1.40 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.48 11.39 55.43 0.63 -24.85 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 12 N -0.55 -11.48 4.01 -233.14 -0.94 -12.42 16 13 C 0.04 0.70 4.66 -6.75 -0.03 0.67 16 14 C 0.06 0.89 6.31 -4.44 -0.03 0.86 16 15 N -0.69 -9.82 6.53 -113.49 -0.74 -10.57 16 16 C 0.03 0.44 6.10 -2.82 -0.02 0.43 16 17 C 0.08 1.25 2.98 -27.47 -0.08 1.17 16 18 H 0.06 1.12 7.22 -51.93 -0.38 0.75 16 19 O -0.57 -9.06 13.17 -35.23 -0.46 -9.52 16 20 C 0.08 1.51 3.48 -4.38 -0.02 1.50 16 21 H 0.03 0.74 7.25 -51.93 -0.38 0.36 16 22 H 0.09 2.28 6.25 -51.93 -0.32 1.96 16 23 H 0.01 0.14 6.59 -51.93 -0.34 -0.20 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.07 1.27 7.81 -51.93 -0.41 0.86 16 26 H 0.01 0.27 6.11 -51.93 -0.32 -0.05 16 27 H 0.07 1.14 6.93 -51.93 -0.36 0.78 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.34 4.88 7.50 -39.29 -0.29 4.58 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 32 H 0.37 3.97 9.08 45.56 0.41 4.39 16 33 H 0.02 0.49 6.97 -51.93 -0.36 0.12 16 34 H 0.10 2.40 6.17 -51.93 -0.32 2.08 16 LS Contribution 258.59 15.07 3.90 3.90 Total: -1.00 -28.97 258.59 -7.26 -36.23 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.25 Total: 6.92 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -0.38 Total: -6.31 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -1.05 Total: -47.83 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.46 Total: -9.52 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.97 -7.26 -36.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307270909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.062 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds