Wall clock time and date at job start Mon Mar 30 2020 03:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47086 * 120.00005 * 2 1 3 5 5 O 1.42900 * 109.47377 * 56.40481 * 4 2 1 6 6 N 1.46898 * 109.47398 * 239.99865 * 2 1 3 7 7 C 1.46901 * 110.99873 * 59.80236 * 6 2 1 8 8 C 1.53238 * 109.34206 * 187.25261 * 7 6 2 9 9 N 1.47078 * 108.52158 * 306.17710 * 8 7 6 10 10 C 1.36935 * 120.87634 * 231.18252 * 9 8 7 11 11 H 1.08000 * 120.00713 * 27.63088 * 10 9 8 12 12 C 1.38819 * 119.99919 * 207.62736 * 10 9 8 13 13 N 1.31615 * 119.99709 * 16.13568 * 12 10 9 14 14 Si 1.86801 * 120.00126 * 196.13657 * 12 10 9 15 15 H 1.48495 * 109.47301 * 179.97438 * 14 12 10 16 16 H 1.48498 * 109.47124 * 300.00165 * 14 12 10 17 17 H 1.48501 * 109.46987 * 59.99699 * 14 12 10 18 18 C 1.47079 * 118.23931 * 51.45583 * 9 8 7 19 19 C 1.46898 * 111.00217 * 184.10838 * 6 2 1 20 20 H 1.08992 * 109.47350 * 60.00171 * 1 2 3 21 21 H 1.09004 * 109.46694 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47079 * 299.99586 * 1 2 3 23 23 H 1.09003 * 109.47292 * 176.40690 * 4 2 1 24 24 H 1.09000 * 109.47261 * 296.40448 * 4 2 1 25 25 H 0.96704 * 114.00155 * 179.97438 * 5 4 2 26 26 H 1.08998 * 109.49101 * 67.29469 * 7 6 2 27 27 H 1.08998 * 109.51836 * 307.23273 * 7 6 2 28 28 H 1.08997 * 109.63269 * 186.46069 * 8 7 6 29 29 H 1.09000 * 109.78385 * 65.98149 * 8 7 6 30 30 H 0.97006 * 119.99575 * 180.02562 * 13 12 10 31 31 H 1.08993 * 109.62811 * 68.25189 * 18 9 8 32 32 H 1.08996 * 109.62475 * 188.83301 * 18 9 8 33 33 H 1.08997 * 109.48981 * 292.70471 * 19 6 2 34 34 H 1.09000 * 109.49133 * 52.76170 * 19 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.4960 -2.0419 1.2923 6 7 2.0197 -0.6925 -1.1994 7 6 1.5449 -0.0291 -2.4210 8 6 1.9222 -0.8786 -3.6393 9 7 3.3688 -1.1409 -3.5960 10 6 4.1612 -0.8908 -4.6845 11 1 3.8798 -0.1258 -5.3930 12 6 5.3263 -1.6204 -4.8771 13 7 5.5155 -2.7442 -4.2186 14 14 6.6257 -1.0074 -6.0710 15 1 7.7648 -1.9597 -6.0947 16 1 6.0385 -0.9033 -7.4310 17 1 7.1067 0.3285 -5.6360 18 6 3.9407 -1.6846 -2.3549 19 6 3.4849 -0.7978 -1.1852 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.1281 -0.7774 1.2177 24 1 1.7303 -0.1716 2.1381 25 1 1.7778 -2.5586 2.0596 26 1 2.0089 0.9536 -2.5051 27 1 0.4616 0.0828 -2.3771 28 1 1.6752 -0.3384 -4.5532 29 1 1.3780 -1.8227 -3.6136 30 1 6.3298 -3.2539 -4.3530 31 1 3.5867 -2.7045 -2.2047 32 1 5.0287 -1.6774 -2.4192 33 1 3.9218 0.1956 -1.2865 34 1 3.8084 -1.2433 -0.2445 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307537412.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:30 Heat of formation + Delta-G solvation = -13.354867 kcal Electronic energy + Delta-G solvation = -15298.165387 eV Core-core repulsion = 12846.128778 eV Total energy + Delta-G solvation = -2452.036609 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.67205 -36.40698 -34.41792 -31.80740 -30.37683 -29.51889 -26.35639 -25.77019 -22.89428 -22.12843 -20.02200 -19.03440 -17.31342 -16.67939 -15.72486 -14.64938 -14.47289 -14.01939 -13.70347 -13.39556 -13.25570 -12.96991 -12.75020 -12.22153 -11.72747 -11.29059 -11.13862 -11.07154 -10.78823 -10.57406 -10.33377 -10.20366 -9.96207 -9.81477 -9.51907 -9.44065 -8.44409 -7.63479 -6.57926 -5.72159 -3.14095 3.41271 3.46555 3.47889 4.34977 4.53214 4.56453 5.14852 5.22854 5.40444 5.45574 5.57698 5.66119 5.84451 5.87469 6.00705 6.06152 6.15678 6.27041 6.32180 6.42667 6.57441 6.63297 6.80965 7.03881 7.34748 7.72683 7.75065 7.79821 7.88992 7.92078 8.50267 9.27610 9.91042 10.50975 11.36404 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.052956 B = 0.008073 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.612800 B = 3467.355878 C = 3733.190200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.041 0.959 4 C 0.083 3.917 5 O -0.552 6.552 6 N -0.517 5.517 7 C 0.041 3.959 8 C 0.149 3.851 9 N -0.596 5.596 10 C -0.252 4.252 11 H 0.064 0.936 12 C 0.001 3.999 13 N -0.904 5.904 14 Si 0.903 3.097 15 H -0.290 1.290 16 H -0.283 1.283 17 H -0.285 1.285 18 C 0.181 3.819 19 C 0.032 3.968 20 H 0.053 0.947 21 H 0.071 0.929 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.039 0.961 25 H 0.368 0.632 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.025 0.975 30 H 0.254 0.746 31 H 0.027 0.973 32 H 0.086 0.914 33 H 0.020 0.980 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 4.875 10.225 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 H 0.058 0.942 4 C 0.004 3.996 5 O -0.355 6.355 6 N -0.243 5.243 7 C -0.088 4.088 8 C 0.023 3.977 9 N -0.319 5.319 10 C -0.381 4.381 11 H 0.082 0.918 12 C -0.198 4.198 13 N -0.549 5.549 14 Si 0.733 3.267 15 H -0.216 1.216 16 H -0.209 1.209 17 H -0.212 1.212 18 C 0.055 3.945 19 C -0.097 4.097 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.213 0.787 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.104 0.896 33 H 0.038 0.962 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.778 4.488 9.627 12.600 hybrid contribution 1.378 0.989 -0.028 1.696 sum -5.400 5.477 9.599 12.301 Atomic orbital electron populations 1.21748 0.94322 1.03000 1.00497 1.21678 0.96252 0.94415 0.90834 0.94156 1.22263 0.97017 0.84021 0.96262 1.86646 1.73466 1.25806 1.49567 1.61950 1.11172 1.50829 1.00324 1.22687 0.98551 0.95984 0.91601 1.20967 0.86682 0.96273 0.93821 1.44133 1.01278 1.75661 1.10850 1.19164 1.03070 1.13295 1.02609 0.91787 1.25051 1.00486 0.95192 0.99051 1.70023 1.26616 1.13252 1.44960 0.86361 0.81456 0.77915 0.80972 1.21621 1.20909 1.21185 1.20918 0.98910 0.92925 0.81727 1.23046 0.86292 0.99376 1.00962 0.92769 0.90953 0.93277 0.93395 0.94260 0.78651 0.95827 0.91658 0.92821 0.95675 0.93623 0.95489 0.89609 0.96156 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.79 37.16 0.33 -1.58 16 2 C 0.08 1.19 2.47 -67.71 -0.17 1.03 16 3 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.08 1.11 6.32 37.16 0.23 1.35 16 5 O -0.55 -7.88 12.76 -35.23 -0.45 -8.33 16 6 N -0.52 -9.94 4.42 -226.05 -1.00 -10.94 16 7 C 0.04 0.79 5.39 -3.70 -0.02 0.77 16 8 C 0.15 3.38 6.69 -3.60 -0.02 3.35 16 9 N -0.60 -15.82 3.03 -171.74 -0.52 -16.34 16 10 C -0.25 -7.17 9.63 -15.06 -0.14 -7.31 16 11 H 0.06 1.78 7.88 -52.49 -0.41 1.36 16 12 C 0.00 0.02 4.95 -17.43 -0.09 -0.07 16 13 N -0.90 -26.93 11.15 55.49 0.62 -26.31 16 14 Si 0.90 22.13 29.58 -169.99 -5.03 17.10 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 C 0.18 4.60 5.44 -3.36 -0.02 4.58 16 19 C 0.03 0.67 5.34 -3.46 -0.02 0.65 16 20 H 0.05 0.73 6.25 -51.93 -0.32 0.40 16 21 H 0.07 1.11 7.59 -51.93 -0.39 0.72 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.65 5.99 -51.93 -0.31 0.34 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.37 3.45 9.12 45.56 0.42 3.87 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 1.10 5.94 -51.93 -0.31 0.79 16 28 H 0.05 1.16 7.95 -51.93 -0.41 0.74 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 2.37 6.15 -51.93 -0.32 2.06 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 1.17 5.76 -51.93 -0.30 0.87 16 LS Contribution 265.22 15.07 4.00 4.00 Total: -1.00 -31.97 265.22 -6.76 -38.73 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.46 Total: -0.68 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 0.08 Total: 2.77 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.90 Total: -53.60 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.45 Total: -8.33 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.97 -6.76 -38.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307537412.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.380 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds