Wall clock time and date at job start Mon Mar 30 2020 03:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47086 * 120.00005 * 2 1 3 5 5 O 1.42900 * 109.47377 * 56.40481 * 4 2 1 6 6 N 1.46898 * 109.47398 * 239.99865 * 2 1 3 7 7 C 1.46901 * 110.99873 * 59.80236 * 6 2 1 8 8 C 1.53238 * 109.34206 * 187.25261 * 7 6 2 9 9 N 1.47078 * 108.52158 * 306.17710 * 8 7 6 10 10 C 1.36935 * 120.87634 * 231.18252 * 9 8 7 11 11 H 1.08000 * 120.00713 * 27.63088 * 10 9 8 12 12 C 1.38819 * 119.99919 * 207.62736 * 10 9 8 13 13 N 1.31615 * 119.99709 * 16.13568 * 12 10 9 14 14 Si 1.86801 * 120.00126 * 196.13657 * 12 10 9 15 15 H 1.48495 * 109.47301 * 179.97438 * 14 12 10 16 16 H 1.48498 * 109.47124 * 300.00165 * 14 12 10 17 17 H 1.48501 * 109.46987 * 59.99699 * 14 12 10 18 18 C 1.47079 * 118.23931 * 51.45583 * 9 8 7 19 19 C 1.46898 * 111.00217 * 184.10838 * 6 2 1 20 20 H 1.08992 * 109.47350 * 60.00171 * 1 2 3 21 21 H 1.09004 * 109.46694 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47079 * 299.99586 * 1 2 3 23 23 H 1.09003 * 109.47292 * 176.40690 * 4 2 1 24 24 H 1.09000 * 109.47261 * 296.40448 * 4 2 1 25 25 H 0.96704 * 114.00155 * 179.97438 * 5 4 2 26 26 H 1.08998 * 109.49101 * 67.29469 * 7 6 2 27 27 H 1.08998 * 109.51836 * 307.23273 * 7 6 2 28 28 H 1.08997 * 109.63269 * 186.46069 * 8 7 6 29 29 H 1.09000 * 109.78385 * 65.98149 * 8 7 6 30 30 H 0.97006 * 119.99575 * 180.02562 * 13 12 10 31 31 H 1.08993 * 109.62811 * 68.25189 * 18 9 8 32 32 H 1.08996 * 109.62475 * 188.83301 * 18 9 8 33 33 H 1.08997 * 109.48981 * 292.70471 * 19 6 2 34 34 H 1.09000 * 109.49133 * 52.76170 * 19 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.4960 -2.0419 1.2923 6 7 2.0197 -0.6925 -1.1994 7 6 1.5449 -0.0291 -2.4210 8 6 1.9222 -0.8786 -3.6393 9 7 3.3688 -1.1409 -3.5960 10 6 4.1612 -0.8908 -4.6845 11 1 3.8798 -0.1258 -5.3930 12 6 5.3263 -1.6204 -4.8771 13 7 5.5155 -2.7442 -4.2186 14 14 6.6257 -1.0074 -6.0710 15 1 7.7648 -1.9597 -6.0947 16 1 6.0385 -0.9033 -7.4310 17 1 7.1067 0.3285 -5.6360 18 6 3.9407 -1.6846 -2.3549 19 6 3.4849 -0.7978 -1.1852 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.1281 -0.7774 1.2177 24 1 1.7303 -0.1716 2.1381 25 1 1.7778 -2.5586 2.0596 26 1 2.0089 0.9536 -2.5051 27 1 0.4616 0.0828 -2.3771 28 1 1.6752 -0.3384 -4.5532 29 1 1.3780 -1.8227 -3.6136 30 1 6.3298 -3.2539 -4.3530 31 1 3.5867 -2.7045 -2.2047 32 1 5.0287 -1.6774 -2.4192 33 1 3.9218 0.1956 -1.2865 34 1 3.8084 -1.2433 -0.2445 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307537412.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:30 Heat of formation + Delta-G solvation = -38.430906 kcal Electronic energy + Delta-G solvation = -15299.252765 eV Core-core repulsion = 12846.128778 eV Total energy + Delta-G solvation = -2453.123988 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.14411 -37.79180 -36.04127 -33.64006 -32.04870 -31.23094 -27.90555 -27.29120 -24.76913 -23.83870 -21.46098 -20.69180 -18.84729 -18.17630 -17.30797 -16.56701 -15.91320 -15.43599 -15.34276 -15.19566 -14.95892 -14.52806 -14.14139 -13.66437 -13.23186 -12.99777 -12.73758 -12.60924 -12.51511 -12.19137 -12.08695 -12.03319 -11.83957 -11.35832 -11.20353 -10.68906 -10.58868 -9.16650 -8.67160 -7.87874 -5.34553 1.45714 1.48398 1.55639 2.50155 2.96768 3.26921 3.53720 3.67117 4.02867 4.13310 4.27436 4.35008 4.49823 4.52617 4.60344 4.64340 4.69132 4.79866 4.90654 4.92111 5.01922 5.13887 5.21338 5.35336 5.47906 5.59848 5.66797 6.24762 6.36767 6.37682 7.06357 7.12142 7.82382 8.38396 9.18711 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.052956 B = 0.008073 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.612800 B = 3467.355878 C = 3733.190200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.069 3.931 3 H 0.051 0.949 4 C 0.083 3.917 5 O -0.576 6.576 6 N -0.531 5.531 7 C 0.052 3.948 8 C 0.144 3.856 9 N -0.615 5.615 10 C -0.269 4.269 11 H 0.068 0.932 12 C -0.052 4.052 13 N -0.937 5.937 14 Si 0.973 3.027 15 H -0.292 1.292 16 H -0.274 1.274 17 H -0.278 1.278 18 C 0.189 3.811 19 C 0.050 3.950 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.073 0.927 25 H 0.388 0.612 26 H 0.022 0.978 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.011 0.989 30 H 0.251 0.749 31 H -0.006 1.006 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.134 6.398 11.136 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.039 4.039 3 H 0.069 0.931 4 C 0.005 3.995 5 O -0.383 6.383 6 N -0.257 5.257 7 C -0.077 4.077 8 C 0.018 3.982 9 N -0.339 5.339 10 C -0.399 4.399 11 H 0.085 0.915 12 C -0.248 4.248 13 N -0.583 5.583 14 Si 0.800 3.200 15 H -0.218 1.218 16 H -0.200 1.200 17 H -0.204 1.204 18 C 0.063 3.937 19 C -0.079 4.079 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.095 0.905 23 H 0.061 0.939 24 H 0.091 0.909 25 H 0.237 0.763 26 H 0.040 0.960 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.029 0.971 30 H 0.060 0.940 31 H 0.012 0.988 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.484 6.025 10.562 14.279 hybrid contribution 1.514 0.478 -0.283 1.613 sum -5.971 6.502 10.280 13.550 Atomic orbital electron populations 1.21693 0.92834 1.02277 1.02034 1.21903 0.97430 0.94818 0.89709 0.93135 1.22283 0.96608 0.84070 0.96522 1.86588 1.73869 1.26534 1.51274 1.61896 1.09756 1.52238 1.01840 1.22520 1.00202 0.94717 0.90229 1.21119 0.84507 0.96338 0.96193 1.44424 1.02879 1.75741 1.10830 1.19536 1.03805 1.13337 1.03219 0.91458 1.25881 1.02467 0.95293 1.01120 1.70197 1.26943 1.14457 1.46658 0.85265 0.78424 0.77320 0.78955 1.21796 1.20000 1.20380 1.20663 0.97086 0.92365 0.83558 1.22696 0.87779 0.97980 0.99437 0.92498 0.92714 0.90508 0.93922 0.90853 0.76337 0.96003 0.88747 0.92148 0.97121 0.94004 0.98836 0.92575 0.96540 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.79 71.98 0.63 -2.55 16 2 C 0.07 1.95 2.47 44.92 0.11 2.06 16 3 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.08 1.99 6.32 71.98 0.45 2.44 16 5 O -0.58 -15.15 12.76 -148.98 -1.90 -17.05 16 6 N -0.53 -19.66 4.42 -869.09 -3.85 -23.51 16 7 C 0.05 1.94 5.39 86.38 0.47 2.40 16 8 C 0.14 6.53 6.69 86.35 0.58 7.11 16 9 N -0.61 -33.21 3.03 -697.26 -2.11 -35.33 16 10 C -0.27 -15.50 9.63 84.04 0.81 -14.69 16 11 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 12 C -0.05 -3.02 4.95 84.86 0.42 -2.60 16 13 N -0.94 -57.35 11.15 21.65 0.24 -57.11 16 14 Si 0.97 45.89 29.58 68.60 2.03 47.92 16 15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 C 0.19 9.89 5.44 86.50 0.47 10.37 16 19 C 0.05 2.06 5.34 86.54 0.46 2.53 16 20 H 0.06 1.33 6.25 -2.39 -0.01 1.31 16 21 H 0.05 1.54 7.59 -2.38 -0.02 1.52 16 22 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.04 1.06 5.99 -2.39 -0.01 1.04 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.39 6.41 9.12 -74.05 -0.68 5.74 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 2.94 5.94 -2.39 -0.01 2.93 16 28 H 0.06 2.59 7.95 -2.39 -0.02 2.57 16 29 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 30 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 31 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H 0.06 3.23 6.15 -2.39 -0.01 3.21 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 2.99 5.76 -2.39 -0.01 2.97 16 Total: -1.00 -69.35 265.22 -0.78 -70.13 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.41 Total: 7.89 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 4.40 Total: 7.06 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -5.72 Total: -115.95 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -1.90 Total: -17.05 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -69.35 -0.78 -70.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307537412.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.696 kcal (2) G-P(sol) polarization free energy of solvation -69.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds