Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99748 * 2 1 4 4 H 1.48506 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47476 * 299.99654 * 3 2 1 6 6 H 1.48501 * 109.47304 * 59.99640 * 3 2 1 7 7 C 1.37874 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99876 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47308 * 180.02562 * 9 7 2 11 11 C 1.48026 * 111.00092 * 66.04298 * 10 9 7 12 12 C 1.50982 * 113.12744 * 84.00138 * 11 10 9 13 13 C 1.54714 * 109.07780 * 92.04412 * 12 11 10 14 14 O 1.36614 * 110.79105 * 286.64904 * 13 12 11 15 15 C 1.43448 * 117.83785 * 61.04331 * 14 13 12 16 16 H 1.08995 * 109.84360 * 37.49305 * 15 14 13 17 17 C 1.52998 * 109.84146 * 158.40089 * 15 14 13 18 18 N 1.46905 * 109.46978 * 299.99777 * 17 15 14 19 19 C 1.47394 * 111.00349 * 193.23267 * 10 9 7 20 20 H 0.96997 * 119.99769 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47390 * 60.00019 * 9 7 2 22 22 H 1.09008 * 109.47462 * 299.99863 * 9 7 2 23 23 H 1.09002 * 108.75030 * 323.05890 * 11 10 9 24 24 H 1.08996 * 108.65576 * 204.87878 * 11 10 9 25 25 H 1.08995 * 109.54028 * 332.15862 * 12 11 10 26 26 H 1.08999 * 109.59799 * 211.96013 * 12 11 10 27 27 H 1.09004 * 109.21057 * 166.31359 * 13 12 11 28 28 H 1.08993 * 109.21078 * 46.99015 * 13 12 11 29 29 H 1.09002 * 109.47288 * 179.97438 * 17 15 14 30 30 H 1.08995 * 109.47151 * 59.99737 * 17 15 14 31 31 H 1.00901 * 110.99869 * 180.02562 * 18 17 15 32 32 H 1.00896 * 110.99543 * 303.95346 * 18 17 15 33 33 H 1.09003 * 109.06558 * 72.72510 * 19 10 9 34 34 H 1.08998 * 109.05808 * 313.80251 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 2.9759 -3.6537 1.2653 12 6 2.2529 -4.3720 2.3792 13 6 2.6660 -5.8630 2.3714 14 8 2.0910 -6.5200 1.3206 15 6 2.4126 -6.0748 -0.0046 16 1 3.4610 -5.7804 -0.0518 17 6 2.1429 -7.1969 -1.0091 18 7 2.9713 -8.3631 -0.6746 19 6 1.5311 -4.8878 -0.3132 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 3.1799 -2.6309 1.5822 24 1 3.9242 -4.1583 1.0804 25 1 1.1767 -4.2911 2.2269 26 1 2.5201 -3.9248 3.3366 27 1 2.3465 -6.3286 3.3037 28 1 3.7505 -5.9342 2.2889 29 1 2.3887 -6.8523 -2.0135 30 1 1.0899 -7.4756 -0.9685 31 1 2.8115 -9.1184 -1.3243 32 1 3.9487 -8.1150 -0.6423 33 1 1.2733 -4.9015 -1.3722 34 1 0.6166 -4.9609 0.2754 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307545325.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = -40.510065 kcal Electronic energy + Delta-G solvation = -15123.828934 eV Core-core repulsion = 12670.614787 eV Total energy + Delta-G solvation = -2453.214147 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.63763 -35.79536 -34.86021 -32.59138 -31.54282 -29.13700 -26.25158 -25.71316 -23.38576 -22.20360 -20.83446 -19.23512 -16.54785 -16.41431 -16.12801 -15.46485 -14.99335 -14.68081 -14.23572 -13.96143 -13.44837 -12.98467 -12.56025 -12.18297 -11.90349 -11.65935 -11.34477 -11.19017 -10.94073 -10.77415 -10.50873 -10.37697 -9.86748 -9.74932 -9.20278 -9.01966 -8.67098 -8.45398 -7.18390 -6.03570 -4.05034 3.29754 3.37180 3.41898 3.97405 4.38204 4.52351 4.95291 5.15428 5.28517 5.31551 5.33876 5.43931 5.59887 5.67932 5.73523 5.84238 6.01988 6.18236 6.29459 6.32614 6.46440 6.63104 6.82244 7.08589 7.26556 7.37288 7.40784 7.78893 7.92264 8.12451 8.19248 8.54513 9.02991 9.59129 11.07207 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.049888 B = 0.007313 C = 0.006936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.123367 B = 3828.059458 C = 4035.708294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.542 5.542 11 C 0.057 3.943 12 C -0.193 4.193 13 C 0.081 3.919 14 O -0.371 6.371 15 C 0.099 3.901 16 H 0.066 0.934 17 C 0.071 3.929 18 N -0.843 5.843 19 C 0.032 3.968 20 H 0.261 0.739 21 H 0.028 0.972 22 H -0.008 1.008 23 H 0.085 0.915 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.031 0.969 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.338 0.662 32 H 0.337 0.663 33 H 0.072 0.928 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.363 -12.072 0.594 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.266 5.266 11 C -0.071 4.071 12 C -0.232 4.232 13 C 0.003 3.997 14 O -0.290 6.290 15 C 0.042 3.958 16 H 0.084 0.916 17 C -0.060 4.060 18 N -0.372 5.372 19 C -0.097 4.097 20 H 0.070 0.930 21 H 0.046 0.954 22 H 0.010 0.990 23 H 0.103 0.897 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.090 0.910 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.001 -12.012 0.931 13.045 hybrid contribution 0.328 1.348 -0.290 1.417 sum 5.330 -10.664 0.641 11.939 Atomic orbital electron populations 1.69975 1.06071 1.26660 1.51108 1.24999 0.94863 0.99323 0.95489 0.86450 0.80058 0.83443 0.77518 1.19672 1.21000 1.21111 1.21201 0.93504 0.89912 1.49839 0.91843 1.19712 0.90133 0.87234 0.96030 1.62336 1.29869 1.02803 1.31607 1.21907 0.95777 1.01540 0.87902 1.22888 1.02582 0.96979 1.00753 1.21771 0.96082 0.92100 0.89790 1.86429 1.70644 1.58682 1.13203 1.21961 0.98928 0.92516 0.82416 0.91610 1.21813 0.99018 0.90152 0.95056 1.58595 1.10935 1.09672 1.57974 1.22374 0.96380 0.89867 1.01115 0.92976 0.95396 0.98978 0.89662 0.93263 0.91085 0.91261 0.89798 0.95062 0.93799 0.90258 0.84990 0.85060 0.90987 0.94253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.26 8.19 -34.44 -0.28 -14.55 16 8 H 0.06 1.77 7.36 -52.49 -0.39 1.39 16 9 C 0.19 5.12 4.61 -4.98 -0.02 5.10 16 10 N -0.54 -11.85 4.73 -237.16 -1.12 -12.98 16 11 C 0.06 1.12 4.95 -4.22 -0.02 1.10 16 12 C -0.19 -3.36 5.63 -26.84 -0.15 -3.51 16 13 C 0.08 1.23 6.43 38.06 0.24 1.48 16 14 O -0.37 -6.21 9.49 -21.73 -0.21 -6.42 16 15 C 0.10 1.56 2.49 -27.72 -0.07 1.49 16 16 H 0.07 1.06 6.78 -51.93 -0.35 0.70 16 17 C 0.07 0.91 6.27 -3.82 -0.02 0.89 16 18 N -0.84 -9.51 9.50 -10.37 -0.10 -9.61 16 19 C 0.03 0.59 4.62 -4.54 -0.02 0.57 16 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.03 0.79 8.04 -51.93 -0.42 0.37 16 22 H -0.01 -0.21 7.58 -51.92 -0.39 -0.61 16 23 H 0.08 1.85 6.54 -51.93 -0.34 1.51 16 24 H 0.05 0.88 6.54 -51.93 -0.34 0.54 16 25 H 0.07 1.41 6.69 -51.93 -0.35 1.06 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.03 0.45 7.72 -51.93 -0.40 0.05 16 29 H 0.04 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.34 2.99 9.08 -39.29 -0.36 2.64 16 32 H 0.34 3.45 8.99 -39.29 -0.35 3.10 16 33 H 0.07 1.29 7.74 -51.93 -0.40 0.89 16 34 H 0.04 0.79 7.12 -51.93 -0.37 0.42 16 LS Contribution 267.56 15.07 4.03 4.03 Total: -1.00 -30.70 267.56 -7.41 -38.11 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.28 Total: 2.33 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.44 Total: -5.98 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.48 Total: -48.72 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.21 Total: -6.42 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.70 -7.41 -38.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307545325.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.398 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds