Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99748 * 2 1 4 4 H 1.48506 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47476 * 299.99654 * 3 2 1 6 6 H 1.48501 * 109.47304 * 59.99640 * 3 2 1 7 7 C 1.37874 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99876 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47308 * 180.02562 * 9 7 2 11 11 C 1.48026 * 111.00092 * 66.04298 * 10 9 7 12 12 C 1.50982 * 113.12744 * 84.00138 * 11 10 9 13 13 C 1.54714 * 109.07780 * 92.04412 * 12 11 10 14 14 O 1.36614 * 110.79105 * 286.64904 * 13 12 11 15 15 C 1.43448 * 117.83785 * 61.04331 * 14 13 12 16 16 H 1.08995 * 109.84360 * 37.49305 * 15 14 13 17 17 C 1.52998 * 109.84146 * 158.40089 * 15 14 13 18 18 N 1.46905 * 109.46978 * 299.99777 * 17 15 14 19 19 C 1.47394 * 111.00349 * 193.23267 * 10 9 7 20 20 H 0.96997 * 119.99769 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47390 * 60.00019 * 9 7 2 22 22 H 1.09008 * 109.47462 * 299.99863 * 9 7 2 23 23 H 1.09002 * 108.75030 * 323.05890 * 11 10 9 24 24 H 1.08996 * 108.65576 * 204.87878 * 11 10 9 25 25 H 1.08995 * 109.54028 * 332.15862 * 12 11 10 26 26 H 1.08999 * 109.59799 * 211.96013 * 12 11 10 27 27 H 1.09004 * 109.21057 * 166.31359 * 13 12 11 28 28 H 1.08993 * 109.21078 * 46.99015 * 13 12 11 29 29 H 1.09002 * 109.47288 * 179.97438 * 17 15 14 30 30 H 1.08995 * 109.47151 * 59.99737 * 17 15 14 31 31 H 1.00901 * 110.99869 * 180.02562 * 18 17 15 32 32 H 1.00896 * 110.99543 * 303.95346 * 18 17 15 33 33 H 1.09003 * 109.06558 * 72.72510 * 19 10 9 34 34 H 1.08998 * 109.05808 * 313.80251 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 2.9759 -3.6537 1.2653 12 6 2.2529 -4.3720 2.3792 13 6 2.6660 -5.8630 2.3714 14 8 2.0910 -6.5200 1.3206 15 6 2.4126 -6.0748 -0.0046 16 1 3.4610 -5.7804 -0.0518 17 6 2.1429 -7.1969 -1.0091 18 7 2.9713 -8.3631 -0.6746 19 6 1.5311 -4.8878 -0.3132 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 3.1799 -2.6309 1.5822 24 1 3.9242 -4.1583 1.0804 25 1 1.1767 -4.2911 2.2269 26 1 2.5201 -3.9248 3.3366 27 1 2.3465 -6.3286 3.3037 28 1 3.7505 -5.9342 2.2889 29 1 2.3887 -6.8523 -2.0135 30 1 1.0899 -7.4756 -0.9685 31 1 2.8115 -9.1184 -1.3243 32 1 3.9487 -8.1150 -0.6423 33 1 1.2733 -4.9015 -1.3722 34 1 0.6166 -4.9609 0.2754 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307545325.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = -65.000706 kcal Electronic energy + Delta-G solvation = -15124.890928 eV Core-core repulsion = 12670.614787 eV Total energy + Delta-G solvation = -2454.276141 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02882 -37.45990 -35.93230 -34.71239 -32.86459 -30.82541 -28.06075 -27.17313 -24.93733 -23.83824 -22.17458 -20.87435 -18.50572 -17.75033 -17.45820 -17.03553 -16.59550 -16.20603 -15.66049 -15.30306 -14.92633 -14.45228 -14.13886 -13.59259 -13.44886 -13.41216 -13.12579 -12.81073 -12.68832 -12.60569 -12.22943 -11.89673 -11.65434 -11.30786 -11.12297 -10.65395 -10.39192 -9.55121 -8.99706 -8.22638 -6.33468 1.39791 1.40277 1.54162 2.38179 2.75633 3.09114 3.16715 3.64152 3.85493 4.03068 4.05527 4.08651 4.33566 4.38796 4.53430 4.56043 4.66954 4.74488 4.84612 4.96125 5.03160 5.10805 5.14737 5.22205 5.35141 5.62862 6.02325 6.22083 6.28427 6.53045 6.66926 6.75429 6.83125 7.36409 8.88679 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.049888 B = 0.007313 C = 0.006936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.123367 B = 3828.059458 C = 4035.708294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.064 0.936 9 C 0.211 3.789 10 N -0.548 5.548 11 C 0.057 3.943 12 C -0.187 4.187 13 C 0.083 3.917 14 O -0.381 6.381 15 C 0.107 3.893 16 H 0.069 0.931 17 C 0.077 3.923 18 N -0.847 5.847 19 C 0.034 3.966 20 H 0.265 0.735 21 H 0.000 1.000 22 H -0.040 1.040 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.353 0.647 32 H 0.345 0.655 33 H 0.077 0.923 34 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.144 -12.761 0.703 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.559 4.559 8 H 0.082 0.918 9 C 0.085 3.915 10 N -0.272 5.272 11 C -0.070 4.070 12 C -0.226 4.226 13 C 0.005 3.995 14 O -0.299 6.299 15 C 0.050 3.950 16 H 0.087 0.913 17 C -0.054 4.054 18 N -0.379 5.379 19 C -0.095 4.095 20 H 0.073 0.927 21 H 0.018 0.982 22 H -0.022 1.022 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.095 0.905 34 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 6.799 -12.736 1.038 14.475 hybrid contribution -0.244 1.516 -0.313 1.567 sum 6.555 -11.220 0.726 13.015 Atomic orbital electron populations 1.70106 1.07852 1.27899 1.51833 1.25956 0.95746 1.03341 0.94753 0.85292 0.78964 0.78350 0.77750 1.18579 1.20330 1.20407 1.21479 0.93613 0.90919 1.49937 0.91788 1.19327 0.90114 0.88959 0.93104 1.62256 1.28753 1.03044 1.33176 1.21930 0.96658 1.00748 0.87691 1.22833 1.00166 0.99043 1.00600 1.21883 0.97157 0.90111 0.90368 1.86441 1.71180 1.58636 1.13690 1.21944 0.98018 0.92197 0.82879 0.91298 1.21694 0.99208 0.89870 0.94658 1.58520 1.11276 1.09404 1.58679 1.22459 0.96203 0.89833 1.01004 0.92660 0.98236 1.02235 0.92200 0.90785 0.94278 0.89630 0.87614 0.93110 0.92364 0.90678 0.83256 0.84196 0.90518 0.96332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.27 13.29 21.45 0.28 -56.99 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.54 29.54 68.60 2.03 46.56 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.52 -29.99 8.19 25.60 0.21 -29.78 16 8 H 0.06 3.60 7.36 -2.91 -0.02 3.58 16 9 C 0.21 11.64 4.61 85.56 0.39 12.03 16 10 N -0.55 -24.37 4.73 -904.25 -4.28 -28.65 16 11 C 0.06 2.24 4.95 85.43 0.42 2.67 16 12 C -0.19 -6.43 5.63 30.52 0.17 -6.26 16 13 C 0.08 2.33 6.43 72.57 0.47 2.80 16 14 O -0.38 -12.05 9.49 -100.67 -0.96 -13.00 16 15 C 0.11 3.21 2.49 29.96 0.07 3.28 16 16 H 0.07 2.04 6.78 -2.39 -0.02 2.02 16 17 C 0.08 1.82 6.27 86.30 0.54 2.36 16 18 N -0.85 -16.77 9.50 -186.71 -1.77 -18.55 16 19 C 0.03 1.27 4.62 85.57 0.40 1.66 16 20 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 21 H 0.00 -0.03 8.04 -2.39 -0.02 -0.05 16 22 H -0.04 -2.41 7.58 -2.38 -0.02 -2.43 16 23 H 0.06 2.63 6.54 -2.39 -0.02 2.61 16 24 H 0.07 2.52 6.54 -2.39 -0.02 2.50 16 25 H 0.04 1.59 6.69 -2.39 -0.02 1.57 16 26 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.11 2.55 8.14 -2.39 -0.02 2.54 16 28 H 0.05 1.27 7.72 -2.39 -0.02 1.25 16 29 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.35 5.27 9.08 -89.69 -0.81 4.45 16 32 H 0.35 6.01 8.99 -89.70 -0.81 5.20 16 33 H 0.08 2.77 7.74 -2.39 -0.02 2.75 16 34 H 0.02 0.77 7.12 -2.39 -0.02 0.76 16 Total: -1.00 -66.69 267.56 -2.09 -68.78 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -0.52 Total: 12.63 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 3.14 Total: -10.78 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -5.77 Total: -104.19 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.96 Total: -13.00 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.69 -2.09 -68.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307545325.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.777 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds