Wall clock time and date at job start Mon Mar 30 2020 03:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99943 * 2 1 4 4 H 1.48502 * 109.47134 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46775 * 299.99951 * 3 2 1 6 6 H 1.48490 * 109.47201 * 59.99863 * 3 2 1 7 7 C 1.37882 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99602 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00097 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47320 * 180.02562 * 9 7 2 11 11 C 1.38732 * 120.78230 * 265.02432 * 10 9 7 12 12 C 1.38096 * 119.23769 * 179.97438 * 11 10 9 13 13 N 1.31936 * 120.82836 * 0.02562 * 12 11 10 14 14 C 1.32015 * 121.69689 * 0.02562 * 13 12 11 15 15 F 1.35103 * 119.65376 * 180.02562 * 14 13 12 16 16 C 1.38605 * 120.77850 * 84.99900 * 10 9 7 17 17 Cl 1.73602 * 120.44016 * 359.75190 * 16 10 9 18 18 H 0.96997 * 120.00369 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47222 * 60.00122 * 9 7 2 20 20 H 1.09004 * 109.47532 * 300.00103 * 9 7 2 21 21 H 1.08003 * 120.37912 * 359.95277 * 11 10 9 22 22 H 1.08004 * 119.58805 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2304 -3.6446 0.0027 11 6 2.6132 -4.2525 -1.1841 12 6 3.5131 -5.2993 -1.1461 13 7 4.0084 -5.7239 0.0007 14 6 3.6676 -5.1717 1.1503 15 9 4.2005 -5.6392 2.3004 16 6 2.7702 -4.1152 1.1894 17 17 2.3328 -3.3881 2.7040 18 1 -0.4850 0.8400 -0.0004 19 1 0.6241 -2.5575 -0.8880 20 1 0.6248 -2.5564 0.8920 21 1 2.2117 -3.9112 -2.1269 22 1 3.8147 -5.7769 -2.0667 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307704854.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:07 Heat of formation + Delta-G solvation = -41.896218 kcal Electronic energy + Delta-G solvation = -11846.936771 eV Core-core repulsion = 9341.526525 eV Total energy + Delta-G solvation = -2505.410247 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.14392 -41.12122 -37.62168 -35.90239 -33.93202 -31.69902 -29.80067 -25.87279 -24.60165 -22.90132 -18.72480 -18.56495 -18.39799 -17.42874 -17.25463 -16.53680 -15.58042 -14.96039 -14.75992 -14.31787 -13.98348 -13.70673 -13.13898 -13.04533 -12.70192 -12.53903 -12.10251 -11.99549 -11.68138 -10.74280 -10.58516 -10.36327 -9.87459 -8.21746 -6.31608 -0.24199 0.04796 1.04027 1.40022 1.43091 1.53758 2.37063 2.41758 2.54333 3.13038 3.38699 3.84785 3.91112 4.31295 4.62408 4.77713 4.99470 5.31158 5.49405 5.58362 5.71526 6.09341 6.49556 6.77281 7.36134 8.89059 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.037708 B = 0.010171 C = 0.009105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.376561 B = 2752.199352 C = 3074.640517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.016 3.984 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.053 3.947 10 C 0.014 3.986 11 C -0.169 4.169 12 C 0.146 3.854 13 N -0.526 5.526 14 C 0.301 3.699 15 F -0.111 7.111 16 C -0.130 4.130 17 Cl -0.045 7.045 18 H 0.266 0.734 19 H 0.029 0.971 20 H 0.023 0.977 21 H 0.171 0.829 22 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.116 -7.785 -1.728 9.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.016 3.984 10 C 0.006 3.994 11 C -0.189 4.189 12 C -0.009 4.009 13 N -0.242 5.242 14 C 0.147 3.853 15 F -0.090 7.090 16 C -0.161 4.161 17 Cl -0.016 7.016 18 H 0.075 0.925 19 H 0.047 0.953 20 H 0.042 0.958 21 H 0.188 0.812 22 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.539 -8.314 -1.522 10.105 hybrid contribution -0.383 1.641 0.690 1.821 sum 5.156 -6.673 -0.832 8.473 Atomic orbital electron populations 1.70042 1.07342 1.27858 1.50997 1.25691 0.95590 1.02416 0.94612 0.85534 0.79039 0.79526 0.77821 1.19171 1.20033 1.20771 1.21093 0.92733 0.90433 1.51232 0.92968 1.18252 0.92527 0.89481 0.98149 1.20913 0.93781 0.93733 0.90993 1.22458 1.00038 0.97418 0.98999 1.23281 0.90467 0.92229 0.94936 1.67229 1.27824 1.31233 0.97865 1.17885 0.92858 0.91590 0.82979 1.91594 1.84613 1.87769 1.45061 1.21745 1.04211 0.99548 0.90576 1.98355 1.91918 1.82497 1.28846 0.92536 0.95276 0.95835 0.81172 0.76427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.23 13.29 21.45 0.28 -51.94 14 2 C 0.02 0.86 5.46 84.66 0.46 1.32 14 3 Si 0.96 42.45 29.54 68.60 2.03 44.47 14 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 14 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 14 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 14 7 C -0.52 -27.13 9.09 25.60 0.23 -26.90 14 8 H 0.05 2.75 7.74 -2.91 -0.02 2.72 14 9 C 0.05 2.53 4.69 29.10 0.14 2.67 14 10 C 0.01 0.55 5.11 -19.66 -0.10 0.45 14 11 C -0.17 -5.18 9.79 22.35 0.22 -4.96 14 12 C 0.15 3.79 11.18 84.64 0.95 4.74 14 13 N -0.53 -16.97 10.37 -196.84 -2.04 -19.01 14 14 C 0.30 10.86 8.40 84.77 0.71 11.57 14 15 F -0.11 -3.94 16.87 44.97 0.76 -3.18 14 16 C -0.13 -5.10 6.35 22.46 0.14 -4.96 14 17 Cl -0.04 -1.80 27.24 -2.72 -0.07 -1.87 14 18 H 0.27 14.20 8.31 -92.71 -0.77 13.43 14 19 H 0.03 1.43 8.07 -2.39 -0.02 1.41 14 20 H 0.02 1.22 7.24 -2.38 -0.02 1.21 14 21 H 0.17 4.39 8.06 -2.91 -0.02 4.37 14 22 H 0.22 3.31 8.06 -2.91 -0.02 3.29 14 Total: -1.00 -59.83 226.17 4.95 -54.88 By element: Atomic # 1 Polarization: -8.51 SS G_CDS: 1.24 Total: -7.27 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 2.75 Total: -16.08 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -1.76 Total: -70.95 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.76 Total: -3.18 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.07 Total: -1.87 kcal Total: -59.83 4.95 -54.88 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307704854.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.985 kcal (2) G-P(sol) polarization free energy of solvation -59.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds