Wall clock time and date at job start Mon Mar 30 2020 03:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35945 * 117.00258 * 2 1 4 4 C 1.38262 * 121.64239 * 179.97438 * 3 2 1 5 5 C 1.35066 * 114.72461 * 179.97438 * 4 3 2 6 6 C 1.50699 * 127.19964 * 180.26258 * 5 4 3 7 7 H 1.09002 * 109.46847 * 339.71327 * 6 5 4 8 8 O 1.42895 * 109.47354 * 219.71103 * 6 5 4 9 9 C 1.50700 * 109.47258 * 99.70685 * 6 5 4 10 10 H 1.08003 * 119.99583 * 0.02562 * 9 6 5 11 11 C 1.37873 * 120.00412 * 179.97438 * 9 6 5 12 12 N 1.31511 * 119.99983 * 180.02562 * 11 9 6 13 13 Si 1.86796 * 119.99745 * 0.02562 * 11 9 6 14 14 H 1.48500 * 109.47620 * 89.99837 * 13 11 9 15 15 H 1.48506 * 109.47098 * 209.99951 * 13 11 9 16 16 H 1.48501 * 109.47215 * 329.99463 * 13 11 9 17 17 S 1.72029 * 105.59807 * 0.02562 * 5 4 3 18 18 N 1.30343 * 121.63766 * 359.97201 * 3 2 1 19 19 H 1.09004 * 109.47035 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47186 * 299.99784 * 1 2 3 21 21 H 1.08994 * 109.47213 * 60.00543 * 1 2 3 22 22 H 1.08000 * 122.63675 * 0.02562 * 4 3 2 23 23 H 0.96704 * 113.99659 * 300.00199 * 8 6 5 24 24 H 0.97008 * 119.99677 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4243 1.3231 0.0005 5 6 3.8881 2.5916 -0.0001 6 6 5.3284 3.0351 -0.0053 7 1 5.9606 2.2204 0.3479 8 8 5.4820 4.1650 0.8560 9 6 5.7326 3.4132 -1.4069 10 1 5.0178 3.3401 -2.2133 11 6 7.0144 3.8534 -1.6598 12 7 7.3669 4.1838 -2.8830 13 14 8.2504 3.9806 -0.2650 14 1 8.9836 2.6958 -0.1345 15 1 9.2137 5.0730 -0.5552 16 1 7.5366 4.2742 1.0037 17 16 2.4908 3.5951 -0.0006 18 7 1.3679 2.3243 -0.0005 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 4.0784 0.4637 0.0006 23 1 4.9471 4.9293 0.6012 24 1 8.2690 4.4932 -3.0609 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307715550.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:41 Heat of formation + Delta-G solvation = -41.345726 kcal Electronic energy + Delta-G solvation = -12132.883961 eV Core-core repulsion = 9753.001597 eV Total energy + Delta-G solvation = -2379.882364 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.040 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.72992 -37.01269 -35.71201 -32.45671 -31.04502 -28.12913 -27.07555 -23.84427 -21.73723 -19.78921 -17.73294 -17.48737 -16.94087 -15.89286 -15.12326 -14.91450 -14.37867 -13.62750 -13.22562 -13.11554 -12.79118 -11.97827 -11.83495 -11.39456 -11.00372 -10.89407 -10.63475 -10.31694 -10.24142 -9.46130 -9.05581 -8.74964 -8.54525 -7.85510 -6.28732 -4.44277 1.27621 1.88589 2.25277 2.95883 3.29466 3.39696 3.46323 3.62639 4.38329 5.01067 5.21105 5.24645 5.30699 5.58489 5.59309 5.72127 6.06622 6.26007 6.54072 6.90488 7.24495 7.42184 8.08100 8.55795 8.76251 9.30411 10.80584 Molecular weight = 215.04amu Principal moments of inertia in cm(-1) A = 0.055058 B = 0.008545 C = 0.008354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.431136 B = 3275.835753 C = 3350.929299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.300 6.300 3 C 0.313 3.687 4 C -0.238 4.238 5 C -0.108 4.108 6 C 0.257 3.743 7 H 0.084 0.916 8 O -0.569 6.569 9 C -0.564 4.564 10 H 0.078 0.922 11 C 0.090 3.910 12 N -0.880 5.880 13 Si 0.868 3.132 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.216 1.216 17 S 0.279 5.721 18 N -0.556 5.556 19 H 0.095 0.905 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.159 0.841 23 H 0.359 0.641 24 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.796 -3.943 6.445 11.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.206 6.206 3 C 0.099 3.901 4 C -0.272 4.272 5 C -0.237 4.237 6 C 0.198 3.802 7 H 0.102 0.898 8 O -0.375 6.375 9 C -0.602 4.602 10 H 0.096 0.904 11 C -0.116 4.116 12 N -0.515 5.515 13 Si 0.694 3.306 14 H -0.209 1.209 15 H -0.217 1.217 16 H -0.139 1.139 17 S 0.427 5.573 18 N -0.396 5.396 19 H 0.114 0.886 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.176 0.824 23 H 0.206 0.794 24 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.597 -2.971 6.643 12.044 hybrid contribution 1.112 -1.201 -0.025 1.637 sum -8.484 -4.172 6.618 11.541 Atomic orbital electron populations 1.22864 0.77694 1.02839 1.02253 1.86246 1.22226 1.23485 1.88692 1.20144 0.90077 0.84761 0.95071 1.20063 0.92140 0.99258 1.15709 1.26780 1.04626 0.96757 0.95570 1.18496 0.83024 0.86789 0.91936 0.89819 1.86788 1.69241 1.24751 1.56763 1.21265 0.99078 1.48018 0.91826 0.90354 1.24948 0.98128 0.92651 0.95907 1.69923 1.19835 1.41711 1.20058 0.87054 0.80200 0.77811 0.85565 1.20932 1.21702 1.13884 1.83660 0.90371 1.13100 1.70125 1.76356 1.26816 1.01360 1.35026 0.88625 0.92554 0.92464 0.82365 0.79362 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.47 101.05 1.06 1.53 14 2 O -0.30 -4.90 10.54 -19.57 -0.21 -5.10 14 3 C 0.31 5.79 7.42 -18.17 -0.13 5.66 14 4 C -0.24 -4.56 10.15 -40.70 -0.41 -4.97 14 5 C -0.11 -2.19 5.47 -35.44 -0.19 -2.38 14 6 C 0.26 5.76 2.81 -29.04 -0.08 5.68 14 7 H 0.08 1.86 7.57 -51.93 -0.39 1.47 14 8 O -0.57 -12.18 10.10 -35.23 -0.36 -12.53 14 9 C -0.56 -14.92 9.33 -34.44 -0.32 -15.24 14 10 H 0.08 2.28 7.98 -52.48 -0.42 1.86 14 11 C 0.09 2.46 5.47 -17.82 -0.10 2.37 14 12 N -0.88 -25.63 13.96 55.43 0.77 -24.85 14 13 Si 0.87 20.41 26.99 -169.99 -4.59 15.82 14 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 14 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 14 16 H -0.22 -4.93 5.31 56.52 0.30 -4.63 14 17 S 0.28 5.12 23.17 -107.50 -2.49 2.62 14 18 N -0.56 -10.37 11.14 28.92 0.32 -10.04 14 19 H 0.10 0.85 8.14 -51.93 -0.42 0.42 14 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 14 21 H 0.06 0.71 8.14 -51.93 -0.42 0.28 14 22 H 0.16 2.77 8.06 -52.49 -0.42 2.35 14 23 H 0.36 6.79 8.57 45.56 0.39 7.18 14 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 14 LS Contribution 231.43 15.07 3.49 3.49 Total: -1.00 -29.89 231.43 -4.59 -34.49 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -1.35 Total: 3.47 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -0.18 Total: -7.36 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 1.10 Total: -34.90 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.56 Total: -17.64 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.59 Total: 15.82 kcal Atomic # 16 Polarization: 5.12 SS G_CDS: -2.49 Total: 2.62 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.89 -4.59 -34.49 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307715550.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.860 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds