Wall clock time and date at job start Mon Mar 30 2020 03:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35946 * 116.99957 * 2 1 4 4 C 1.38269 * 121.64049 * 179.97438 * 3 2 1 5 5 C 1.35050 * 114.72482 * 180.02562 * 4 3 2 6 6 C 1.50703 * 127.19806 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47438 * 24.99782 * 6 5 4 8 8 O 1.42905 * 109.47264 * 145.00039 * 6 5 4 9 9 C 1.50701 * 109.47064 * 264.99864 * 6 5 4 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 6 5 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 6 5 12 12 N 1.31511 * 120.00346 * 0.02562 * 11 9 6 13 13 Si 1.86805 * 119.99914 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.47094 * 90.00226 * 13 11 9 15 15 H 1.48498 * 109.47121 * 210.00323 * 13 11 9 16 16 H 1.48495 * 109.46933 * 330.00287 * 13 11 9 17 17 S 1.72019 * 105.60302 * 0.24216 * 5 4 3 18 18 N 1.30346 * 121.64054 * 0.02562 * 3 2 1 19 19 H 1.08993 * 109.47779 * 300.00766 * 1 2 3 20 20 H 1.09003 * 109.46544 * 60.00848 * 1 2 3 21 21 H 1.08997 * 109.47534 * 179.97438 * 1 2 3 22 22 H 1.08004 * 122.63571 * 0.02562 * 4 3 2 23 23 H 0.96705 * 113.99788 * 59.99913 * 8 6 5 24 24 H 0.96993 * 120.00442 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4244 1.3232 0.0005 5 6 3.8881 2.5915 0.0010 6 6 5.3284 3.0350 0.0022 7 1 5.9501 2.2519 -0.4317 8 8 5.4595 4.2301 -0.7704 9 6 5.7709 3.3011 1.4180 10 1 5.0786 3.1625 2.2352 11 6 7.0600 3.7205 1.6700 12 7 7.9032 3.8888 0.6750 13 14 7.6088 4.0496 3.4251 14 1 8.1641 2.8037 4.0119 15 1 8.6524 5.1060 3.4275 16 1 6.4459 4.5008 4.2308 17 16 2.4910 3.5950 0.0077 18 7 1.3679 2.3243 0.0005 19 1 -0.3634 0.5139 0.8898 20 1 -0.3632 0.5137 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 4.0785 0.4638 0.0006 23 1 4.9325 4.9711 -0.4412 24 1 8.8099 4.1842 0.8522 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307715551.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:43 Heat of formation + Delta-G solvation = -70.945671 kcal Electronic energy + Delta-G solvation = -12092.820929 eV Core-core repulsion = 9711.655015 eV Total energy + Delta-G solvation = -2381.165914 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.06846 -38.42770 -37.11274 -34.36777 -32.51972 -29.40387 -28.34840 -25.60321 -23.48745 -21.21472 -19.19366 -19.09992 -18.34347 -17.12949 -16.73804 -16.60642 -15.66492 -15.35740 -14.88596 -14.45276 -14.14442 -13.48653 -13.08859 -12.88433 -12.79411 -12.24372 -12.17059 -11.97683 -11.69505 -11.54737 -10.90745 -10.66087 -10.22269 -9.26184 -8.20949 -6.48894 -0.21277 0.44723 0.80618 1.43197 1.43737 1.50908 1.55907 2.21694 2.38810 3.05674 3.81862 4.08242 4.27158 4.35666 4.35850 4.57927 4.68836 4.85216 5.16068 5.38511 5.59640 5.86025 6.11934 6.58652 7.17682 7.33931 8.83121 Molecular weight = 215.04amu Principal moments of inertia in cm(-1) A = 0.046959 B = 0.008457 C = 0.007997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.122495 B = 3310.066498 C = 3500.351088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.306 6.306 3 C 0.313 3.687 4 C -0.242 4.242 5 C -0.136 4.136 6 C 0.294 3.706 7 H 0.059 0.941 8 O -0.565 6.565 9 C -0.579 4.579 10 H 0.060 0.940 11 C 0.035 3.965 12 N -0.891 5.891 13 Si 0.964 3.036 14 H -0.273 1.273 15 H -0.279 1.279 16 H -0.266 1.266 17 S 0.300 5.700 18 N -0.559 5.559 19 H 0.056 0.944 20 H 0.057 0.943 21 H 0.133 0.867 22 H 0.165 0.835 23 H 0.360 0.640 24 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.651 -3.613 0.227 11.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.212 6.212 3 C 0.099 3.901 4 C -0.276 4.276 5 C -0.265 4.265 6 C 0.234 3.766 7 H 0.077 0.923 8 O -0.369 6.369 9 C -0.617 4.617 10 H 0.078 0.922 11 C -0.169 4.169 12 N -0.526 5.526 13 Si 0.788 3.212 14 H -0.198 1.198 15 H -0.204 1.204 16 H -0.190 1.190 17 S 0.448 5.552 18 N -0.400 5.400 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.151 0.849 22 H 0.182 0.818 23 H 0.206 0.794 24 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.413 -2.645 -0.196 11.718 hybrid contribution 0.999 -1.075 1.050 1.804 sum -10.415 -3.720 0.854 11.092 Atomic orbital electron populations 1.23202 0.75412 1.05387 1.02250 1.86257 1.24458 1.22239 1.88287 1.20139 0.89878 0.85463 0.94639 1.20222 0.92869 0.99255 1.15242 1.26942 1.04786 0.98004 0.96766 1.17821 0.82177 0.84916 0.91659 0.92320 1.86608 1.71808 1.22245 1.56239 1.21684 0.98050 1.49772 0.92236 0.92224 1.25830 0.96180 0.93571 1.01314 1.70163 1.05826 1.43706 1.32945 0.85489 0.78247 0.78178 0.79324 1.19798 1.20413 1.18998 1.83431 0.89145 1.12630 1.69969 1.76340 1.26795 1.01522 1.35370 0.92565 0.92393 0.84878 0.81793 0.79392 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.47 113.37 1.19 1.90 14 2 O -0.31 -9.59 10.54 -92.94 -0.98 -10.57 14 3 C 0.31 11.39 7.42 84.92 0.63 12.02 14 4 C -0.24 -9.48 10.15 21.54 0.22 -9.26 14 5 C -0.14 -5.72 5.50 24.95 0.14 -5.58 14 6 C 0.29 14.52 3.33 29.10 0.10 14.62 14 7 H 0.06 3.17 8.14 -2.39 -0.02 3.15 14 8 O -0.56 -27.91 12.65 -148.98 -1.89 -29.80 14 9 C -0.58 -30.37 8.75 25.60 0.22 -30.15 14 10 H 0.06 3.09 7.74 -2.91 -0.02 3.07 14 11 C 0.04 1.87 5.40 84.66 0.46 2.33 14 12 N -0.89 -50.19 12.84 21.45 0.28 -49.92 14 13 Si 0.96 41.45 29.54 68.60 2.03 43.47 14 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 14 15 H -0.28 -11.73 7.11 99.48 0.71 -11.02 14 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 14 17 S 0.30 10.94 23.07 -56.49 -1.30 9.64 14 18 N -0.56 -20.35 11.14 -176.09 -1.96 -22.31 14 19 H 0.06 1.27 8.14 -2.39 -0.02 1.25 14 20 H 0.06 1.28 8.14 -2.39 -0.02 1.26 14 21 H 0.13 1.94 8.14 -2.39 -0.02 1.92 14 22 H 0.16 6.05 8.06 -2.91 -0.02 6.03 14 23 H 0.36 15.57 8.52 -74.05 -0.63 14.94 14 24 H 0.27 14.20 8.31 -92.71 -0.77 13.43 14 Total: -1.00 -60.44 237.29 -0.28 -60.73 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.60 Total: 12.88 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 2.95 Total: -14.13 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.69 Total: -72.23 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -2.86 Total: -40.36 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 10.94 SS G_CDS: -1.30 Total: 9.64 kcal Total: -60.44 -0.28 -60.73 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307715551.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.220 kcal (2) G-P(sol) polarization free energy of solvation -60.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds