Wall clock time and date at job start Mon Mar 30 2020 02:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.46784 * 2 1 4 4 C 1.42907 * 113.99730 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46865 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.89787 * 59.48084 * 5 4 3 7 7 C 1.54383 * 109.82773 * 180.41244 * 5 4 3 8 8 C 1.55305 * 102.25548 * 140.86866 * 7 5 4 9 9 C 1.54947 * 100.94065 * 325.86655 * 8 7 5 10 10 H 1.08998 * 110.39199 * 277.48532 * 9 8 7 11 11 C 1.50694 * 110.31118 * 155.35767 * 9 8 7 12 12 H 1.08002 * 120.00179 * 2.83198 * 11 9 8 13 13 C 1.37879 * 120.00472 * 182.83515 * 11 9 8 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47339 * 179.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00306 * 15 13 11 18 18 H 1.48504 * 109.46636 * 59.99865 * 15 13 11 19 19 O 1.43240 * 109.83044 * 298.54184 * 5 4 3 20 20 H 1.08999 * 109.47216 * 59.99731 * 1 2 3 21 21 H 1.08998 * 109.47233 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47053 * 300.00083 * 1 2 3 23 23 H 1.09001 * 109.47085 * 240.00680 * 2 1 3 24 24 H 1.08999 * 109.47216 * 120.00269 * 2 1 3 25 25 H 1.08995 * 109.46842 * 59.99739 * 4 3 2 26 26 H 1.08997 * 109.46911 * 300.00196 * 4 3 2 27 27 H 1.08997 * 109.46993 * 300.51568 * 6 5 4 28 28 H 1.08995 * 109.47368 * 60.52174 * 6 5 4 29 29 H 1.09007 * 109.46709 * 180.51970 * 6 5 4 30 30 H 1.09003 * 110.85044 * 259.06014 * 7 5 4 31 31 H 1.08995 * 110.84899 * 22.47512 * 7 5 4 32 32 H 1.08991 * 111.12455 * 207.94757 * 8 7 5 33 33 H 1.09000 * 111.12465 * 83.78197 * 8 7 5 34 34 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 3.2542 3.6292 1.2401 7 6 5.3634 3.0700 -0.0110 8 6 5.5845 4.2734 -0.9675 9 6 4.4224 4.0683 -1.9716 10 1 4.7012 3.3378 -2.7311 11 6 4.0522 5.3783 -2.6180 12 1 4.6122 6.2721 -2.3862 13 6 2.9985 5.4358 -3.5054 14 7 2.3168 4.3472 -3.7880 15 14 2.5391 7.0597 -4.3061 16 1 1.3811 6.8546 -5.2127 17 1 2.1775 8.0448 -3.2555 18 1 3.6943 7.5706 -5.0871 19 8 3.3279 3.5746 -1.1830 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5137 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 3.8332 0.9767 -0.8908 26 1 3.8340 0.9765 0.8891 27 1 2.1679 3.5391 1.2383 28 1 3.6564 3.1573 2.1365 29 1 3.5314 4.6833 1.2288 30 1 5.7409 3.2933 0.9869 31 1 5.8272 2.1663 -0.4060 32 1 6.5512 4.2063 -1.4664 33 1 5.4830 5.2204 -0.4373 34 1 1.5753 4.3877 -4.4121 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308210807.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:38 Heat of formation + Delta-G solvation = -125.810663 kcal Electronic energy + Delta-G solvation = -15173.581179 eV Core-core repulsion = 12684.375370 eV Total energy + Delta-G solvation = -2489.205810 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46087 -38.46733 -34.95453 -33.24618 -32.52626 -31.48763 -28.35388 -27.29796 -24.74350 -23.61978 -22.10823 -20.69922 -18.59671 -17.45436 -17.20210 -16.93905 -16.56432 -16.04963 -15.27715 -14.61941 -14.37418 -13.76365 -13.69106 -13.59508 -13.46267 -13.12254 -12.91421 -12.77265 -12.41107 -12.23387 -12.12282 -12.08174 -11.97461 -11.50909 -11.33263 -10.94960 -10.67237 -10.44612 -9.75641 -8.11859 -6.33182 1.39049 1.42986 1.50268 2.41514 2.81534 3.09103 3.62326 3.86722 4.01407 4.16055 4.17778 4.31111 4.36486 4.47764 4.49628 4.51551 4.70682 4.81114 4.86870 4.90889 4.94614 5.03819 5.09244 5.21234 5.24146 5.26834 5.52019 5.61256 5.77435 6.20824 6.41331 6.65370 7.16446 7.43580 8.95691 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028104 B = 0.009934 C = 0.008014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.061597 B = 2817.987340 C = 3492.902612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 O -0.404 6.404 4 C 0.069 3.931 5 C 0.077 3.923 6 C -0.133 4.133 7 C -0.132 4.132 8 C -0.137 4.137 9 C 0.198 3.802 10 H -0.013 1.013 11 C -0.558 4.558 12 H 0.065 0.935 13 C 0.020 3.980 14 N -0.902 5.902 15 Si 0.961 3.039 16 H -0.284 1.284 17 H -0.270 1.270 18 H -0.261 1.261 19 O -0.377 6.377 20 H 0.041 0.959 21 H 0.097 0.903 22 H 0.061 0.939 23 H 0.040 0.960 24 H 0.068 0.932 25 H 0.031 0.969 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.545 -6.989 9.587 12.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.324 6.324 4 C -0.008 4.008 5 C 0.036 3.964 6 C -0.190 4.190 7 C -0.169 4.169 8 C -0.175 4.175 9 C 0.142 3.858 10 H 0.004 0.996 11 C -0.595 4.595 12 H 0.084 0.916 13 C -0.182 4.182 14 N -0.539 5.539 15 Si 0.785 3.215 16 H -0.210 1.210 17 H -0.196 1.196 18 H -0.186 1.186 19 O -0.297 6.297 20 H 0.060 0.940 21 H 0.116 0.884 22 H 0.080 0.920 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.049 0.951 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.068 -6.896 9.432 11.865 hybrid contribution -0.165 0.435 -0.832 0.954 sum 1.903 -6.461 8.599 10.923 Atomic orbital electron populations 1.21735 0.93180 1.03284 1.02125 1.22659 0.96428 0.83450 1.00388 1.87998 1.21636 1.27410 1.95349 1.22898 0.81381 0.96634 0.99859 1.22394 0.93940 0.91208 0.88818 1.21859 1.00805 1.00068 0.96290 1.23073 0.93476 0.98809 1.01537 1.23174 0.99047 0.98169 0.97087 1.20426 0.84043 0.92307 0.89011 0.99552 1.21533 1.17042 0.95513 1.25401 0.91644 1.25998 0.95788 0.99904 0.96493 1.70211 1.19975 1.29783 1.33921 0.85597 0.78011 0.79577 0.78325 1.20953 1.19553 1.18596 1.88856 1.33337 1.75028 1.32498 0.94015 0.88391 0.91980 0.94177 0.91396 0.95094 0.90113 0.93963 0.89460 0.93425 0.87710 0.90227 0.90248 0.91577 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 10.28 71.98 0.74 -3.11 16 2 C 0.05 1.40 6.66 71.98 0.48 1.88 16 3 O -0.40 -16.25 9.60 -141.77 -1.36 -17.61 16 4 C 0.07 2.52 4.94 71.98 0.36 2.88 16 5 C 0.08 3.13 1.04 -10.32 -0.01 3.12 16 6 C -0.13 -4.83 8.59 71.98 0.62 -4.21 16 7 C -0.13 -4.43 6.09 31.86 0.19 -4.23 16 8 C -0.14 -5.63 6.53 32.05 0.21 -5.43 16 9 C 0.20 10.80 3.27 30.51 0.10 10.90 16 10 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 11 C -0.56 -32.89 8.81 25.60 0.23 -32.66 16 12 H 0.07 3.67 7.77 -2.91 -0.02 3.65 16 13 C 0.02 1.20 5.42 84.66 0.46 1.66 16 14 N -0.90 -57.56 12.93 21.45 0.28 -57.29 16 15 Si 0.96 45.82 29.54 68.60 2.03 47.85 16 16 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 19 O -0.38 -21.00 9.81 -141.77 -1.39 -22.39 16 20 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.04 1.68 7.68 -2.39 -0.02 1.67 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.10 2.75 7.82 -2.39 -0.02 2.73 16 31 H 0.08 2.42 7.85 -2.39 -0.02 2.40 16 32 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.07 2.70 8.05 -2.39 -0.02 2.68 16 34 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -72.96 281.84 3.96 -68.99 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.04 Total: 9.64 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 3.37 Total: -29.20 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.28 Total: -57.29 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -2.75 Total: -40.00 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -72.96 3.96 -68.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308210807.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.817 kcal (2) G-P(sol) polarization free energy of solvation -72.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds