Wall clock time and date at job start Mon Mar 30 2020 02:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47088 * 2 1 4 4 C 1.42904 * 113.99902 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46715 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.87118 * 306.00267 * 5 4 3 7 7 C 1.54106 * 109.87640 * 185.00042 * 5 4 3 8 8 C 1.54807 * 104.18688 * 238.39367 * 7 5 4 9 9 C 1.54994 * 102.09494 * 339.12124 * 8 7 5 10 10 H 1.08998 * 110.61564 * 278.52047 * 9 8 7 11 11 C 1.50698 * 110.75665 * 155.58942 * 9 8 7 12 12 H 1.08002 * 119.99703 * 4.39099 * 11 9 8 13 13 C 1.37872 * 120.00169 * 184.39785 * 11 9 8 14 14 N 1.31518 * 120.00039 * 179.97438 * 13 11 9 15 15 Si 1.86796 * 120.00127 * 359.97438 * 13 11 9 16 16 H 1.48504 * 109.47523 * 89.99927 * 15 13 11 17 17 H 1.48506 * 109.47495 * 210.00289 * 15 13 11 18 18 H 1.48503 * 109.47191 * 330.00031 * 15 13 11 19 19 O 1.43739 * 110.00806 * 67.09346 * 5 4 3 20 20 H 1.08999 * 109.46744 * 299.99494 * 1 2 3 21 21 H 1.08990 * 109.47387 * 59.99587 * 1 2 3 22 22 H 1.08998 * 109.47048 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46744 * 240.00505 * 2 1 3 24 24 H 1.09003 * 109.47211 * 120.00199 * 2 1 3 25 25 H 1.08994 * 109.47226 * 60.00163 * 4 3 2 26 26 H 1.08996 * 109.47117 * 300.00044 * 4 3 2 27 27 H 1.09002 * 109.47466 * 299.00264 * 6 5 4 28 28 H 1.09003 * 109.46921 * 58.99890 * 6 5 4 29 29 H 1.09002 * 109.47243 * 178.99738 * 6 5 4 30 30 H 1.08997 * 110.48714 * 357.07028 * 7 5 4 31 31 H 1.09000 * 110.48945 * 119.71900 * 7 5 4 32 32 H 1.09005 * 110.90346 * 97.31858 * 8 7 5 33 33 H 1.09000 * 110.90998 * 220.91594 * 8 7 5 34 34 H 0.96997 * 119.99621 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 3.1416 3.6596 -1.1632 7 6 5.3553 3.0725 -0.1268 8 6 5.7735 3.8594 1.1390 9 6 4.4449 4.5440 1.5495 10 1 4.2802 5.4463 0.9607 11 6 4.4424 4.8655 3.0218 12 1 5.3246 4.6796 3.6166 13 6 3.3140 5.3966 3.6096 14 7 3.3117 5.6767 4.8946 15 14 1.7885 5.7185 2.5808 16 1 0.9223 4.5123 2.5888 17 1 1.0409 6.8685 3.1502 18 1 2.1892 6.0309 1.1854 19 8 3.4447 3.5483 1.2448 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8898 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.8333 0.9767 -0.8908 26 1 3.8340 0.9764 0.8891 27 1 3.4645 3.2167 -2.1054 28 1 2.0604 3.5606 -1.0669 29 1 3.4128 4.7152 -1.1460 30 1 5.8249 2.0890 -0.1371 31 1 5.6161 3.6303 -1.0263 32 1 6.1203 3.1832 1.9205 33 1 6.5362 4.6011 0.9017 34 1 2.5179 6.0507 5.3080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308210810.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:47 Heat of formation + Delta-G solvation = -124.758333 kcal Electronic energy + Delta-G solvation = -15263.805445 eV Core-core repulsion = 12774.645268 eV Total energy + Delta-G solvation = -2489.160177 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.68716 -38.58649 -35.01252 -33.51080 -32.66228 -31.59506 -28.84164 -27.36751 -24.60892 -23.62311 -21.97467 -20.91129 -19.07269 -17.69244 -17.15706 -16.91658 -16.64416 -15.91014 -15.48962 -14.82094 -14.55802 -14.27080 -14.08253 -13.67492 -13.46912 -13.17109 -12.95145 -12.71691 -12.42709 -12.29698 -12.15361 -12.01469 -11.80869 -11.55521 -11.36821 -11.25964 -10.86893 -10.49472 -10.17787 -8.39130 -6.50300 1.30606 1.40578 1.50404 2.34290 2.76799 2.85331 3.45302 3.81902 3.99880 4.06683 4.15546 4.26506 4.32251 4.41166 4.49079 4.49255 4.60566 4.67102 4.77672 4.86155 4.95831 5.00363 5.03763 5.14355 5.16680 5.24207 5.42877 5.46839 5.52788 6.18226 6.32121 6.47306 6.70320 7.25443 8.75144 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026191 B = 0.011660 C = 0.009403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.814935 B = 2400.864137 C = 2976.922835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.409 6.409 4 C 0.077 3.923 5 C 0.078 3.922 6 C -0.151 4.151 7 C -0.130 4.130 8 C -0.133 4.133 9 C 0.163 3.837 10 H 0.026 0.974 11 C -0.525 4.525 12 H 0.048 0.952 13 C 0.030 3.970 14 N -0.937 5.937 15 Si 0.962 3.038 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.255 1.255 19 O -0.396 6.396 20 H 0.042 0.958 21 H 0.061 0.939 22 H 0.096 0.904 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -10.224 -15.134 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.329 6.329 4 C 0.000 4.000 5 C 0.038 3.962 6 C -0.208 4.208 7 C -0.167 4.167 8 C -0.171 4.171 9 C 0.107 3.893 10 H 0.043 0.957 11 C -0.562 4.562 12 H 0.066 0.934 13 C -0.169 4.169 14 N -0.577 5.577 15 Si 0.789 3.211 16 H -0.212 1.212 17 H -0.217 1.217 18 H -0.179 1.179 19 O -0.317 6.317 20 H 0.061 0.939 21 H 0.081 0.919 22 H 0.115 0.885 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.053 -10.052 -14.881 17.989 hybrid contribution -0.463 0.186 0.365 0.618 sum -1.516 -9.866 -14.515 17.616 Atomic orbital electron populations 1.21759 0.93314 1.03355 1.02173 1.22667 0.96250 0.83193 1.00765 1.87953 1.21709 1.27756 1.95488 1.22715 0.81293 0.95001 1.00978 1.22429 0.94932 0.92406 0.86408 1.22112 1.00796 0.99969 0.97914 1.22922 0.92845 1.02243 0.98736 1.22936 0.97726 0.99371 0.97047 1.21085 0.86093 0.88155 0.93936 0.95667 1.21266 0.99843 1.41182 0.93901 0.93386 1.25821 1.01723 0.93612 0.95786 1.70035 1.30687 1.44753 1.12221 0.85456 0.79241 0.76670 0.79734 1.21168 1.21746 1.17894 1.89044 1.50248 1.54019 1.38409 0.93894 0.91944 0.88513 0.91233 0.93749 0.89210 0.93932 0.89078 0.93492 0.93456 0.88701 0.88324 0.92432 0.89852 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 10.28 71.98 0.74 -2.62 16 2 C 0.05 1.20 6.66 71.98 0.48 1.68 16 3 O -0.41 -14.14 9.43 -147.54 -1.39 -15.53 16 4 C 0.08 2.39 4.91 71.98 0.35 2.75 16 5 C 0.08 2.80 0.98 -10.42 -0.01 2.79 16 6 C -0.15 -4.85 8.41 71.98 0.61 -4.24 16 7 C -0.13 -3.85 6.27 31.59 0.20 -3.65 16 8 C -0.13 -5.12 6.56 31.89 0.21 -4.92 16 9 C 0.16 8.06 2.47 30.53 0.08 8.14 16 10 H 0.03 1.27 7.31 -2.39 -0.02 1.25 16 11 C -0.52 -31.59 9.42 25.60 0.24 -31.35 16 12 H 0.05 3.10 8.03 -2.91 -0.02 3.08 16 13 C 0.03 1.88 5.47 84.65 0.46 2.35 16 14 N -0.94 -60.72 13.96 21.45 0.30 -60.42 16 15 Si 0.96 51.02 26.33 68.60 1.81 52.83 16 16 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 17 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 18 H -0.25 -12.83 6.59 99.48 0.66 -12.18 16 19 O -0.40 -19.46 8.46 -147.54 -1.25 -20.71 16 20 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 1.67 7.53 -2.39 -0.02 1.65 16 29 H 0.05 1.57 8.11 -2.39 -0.02 1.55 16 30 H 0.09 2.28 7.70 -2.39 -0.02 2.26 16 31 H 0.10 2.38 7.70 -2.39 -0.02 2.36 16 32 H 0.06 2.33 8.05 -2.38 -0.02 2.31 16 33 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -73.02 276.42 3.81 -69.21 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 0.99 Total: 3.70 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 3.36 Total: -29.08 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.30 Total: -60.42 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -2.64 Total: -36.24 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 1.81 Total: 52.83 kcal Total: -73.02 3.81 -69.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308210810.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.548 kcal (2) G-P(sol) polarization free energy of solvation -73.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds