Wall clock time and date at job start Mon Mar 30 2020 02:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00278 * 2 1 4 4 H 1.48494 * 109.47360 * 270.00729 * 3 2 1 5 5 H 1.48504 * 109.46569 * 30.00487 * 3 2 1 6 6 H 1.48498 * 109.47210 * 149.99741 * 3 2 1 7 7 C 1.38812 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00298 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99730 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.50600 * 35.08501 * 10 9 7 12 12 C 1.53113 * 109.50488 * 274.99967 * 10 9 7 13 13 C 1.53121 * 109.16201 * 182.40669 * 12 10 9 14 14 C 1.53034 * 109.27481 * 57.65961 * 13 12 10 15 15 N 1.46845 * 109.52523 * 300.81881 * 14 13 12 16 16 C 1.46896 * 111.00376 * 185.84013 * 15 14 13 17 17 C 1.53002 * 109.47035 * 66.04805 * 16 15 14 18 18 O 1.42905 * 109.47079 * 64.99813 * 17 16 15 19 19 C 1.46853 * 111.19955 * 61.74307 * 15 14 13 20 20 H 0.96994 * 119.99687 * 359.97438 * 1 2 3 21 21 H 0.96998 * 119.99768 * 0.02562 * 9 7 2 22 22 H 1.09002 * 109.52035 * 62.50381 * 12 10 9 23 23 H 1.09005 * 109.57863 * 302.34866 * 12 10 9 24 24 H 1.08998 * 109.50361 * 297.71776 * 13 12 10 25 25 H 1.09001 * 109.53658 * 177.61863 * 13 12 10 26 26 H 1.09002 * 109.45893 * 180.80704 * 14 13 12 27 27 H 1.09001 * 109.45773 * 60.82991 * 14 13 12 28 28 H 1.08997 * 109.47137 * 306.04985 * 16 15 14 29 29 H 1.09005 * 109.47283 * 186.04515 * 16 15 14 30 30 H 1.09004 * 109.46930 * 305.00039 * 17 16 15 31 31 H 1.09000 * 109.47312 * 184.99983 * 17 16 15 32 32 H 0.96705 * 113.99788 * 180.02562 * 18 17 16 33 33 H 1.08999 * 109.45926 * 58.27524 * 19 15 14 34 34 H 1.08995 * 109.46387 * 178.24322 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6525 0.7002 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9681 -3.5516 0.5900 12 6 2.4226 -4.0367 -1.4383 13 6 3.1346 -5.3923 -1.4349 14 6 2.2247 -6.4391 -0.7883 15 7 1.9053 -6.0304 0.5855 16 6 1.1475 -7.0775 1.2836 17 6 2.0334 -8.3113 1.4677 18 8 3.1226 -7.9906 2.3354 19 6 1.1793 -4.7540 0.6046 20 1 -0.4849 0.8400 0.0004 21 1 0.3556 -2.3881 -0.0005 22 1 3.0840 -3.2790 -1.8587 23 1 1.5159 -4.1029 -2.0397 24 1 4.0616 -5.3150 -0.8668 25 1 3.3594 -5.6885 -2.4595 26 1 2.7344 -7.4025 -0.7713 27 1 1.3037 -6.5256 -1.3649 28 1 0.2701 -7.3447 0.6948 29 1 0.8317 -6.7081 2.2594 30 1 2.4212 -8.6278 0.4994 31 1 1.4458 -9.1185 1.9052 32 1 3.7270 -8.7280 2.4969 33 1 0.2633 -4.8486 0.0215 34 1 0.9297 -4.4935 1.6331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308424225.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:41 Heat of formation + Delta-G solvation = -64.297378 kcal Electronic energy + Delta-G solvation = -14803.207988 eV Core-core repulsion = 12348.962346 eV Total energy + Delta-G solvation = -2454.245642 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18379 -37.72878 -36.21886 -34.17587 -32.81586 -30.37698 -29.13994 -25.96903 -24.75269 -23.52398 -21.83344 -20.74018 -19.17450 -18.28124 -17.35016 -16.55494 -16.18892 -15.48123 -15.37530 -15.15876 -14.78356 -14.67311 -14.14228 -13.87899 -13.49168 -12.97093 -12.88988 -12.83558 -12.28517 -12.14545 -12.06425 -11.94533 -11.73209 -11.50971 -11.13826 -10.88584 -10.71710 -9.20390 -9.02159 -7.95245 -5.24279 1.46531 1.48646 1.57316 2.53757 2.90412 3.37838 3.50909 3.90491 4.00097 4.05402 4.21851 4.25534 4.34877 4.45382 4.51972 4.59941 4.65120 4.74232 4.81460 4.86697 5.00040 5.04602 5.15535 5.17704 5.44708 5.49440 5.58446 6.10608 6.25232 6.28950 7.08728 7.32512 8.07039 8.31822 9.28619 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.049945 B = 0.006516 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.485058 B = 4296.339729 C = 4428.255165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.238 4.238 8 H 0.073 0.927 9 N -0.738 5.738 10 C 0.179 3.821 11 H 0.037 0.963 12 C -0.128 4.128 13 C -0.106 4.106 14 C 0.056 3.944 15 N -0.537 5.537 16 C 0.047 3.953 17 C 0.085 3.915 18 O -0.585 6.585 19 C 0.068 3.932 20 H 0.251 0.749 21 H 0.371 0.629 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.391 0.609 33 H 0.026 0.974 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.615 -18.624 -0.268 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.377 5.377 10 C 0.070 3.930 11 H 0.055 0.945 12 C -0.168 4.168 13 C -0.145 4.145 14 C -0.071 4.071 15 N -0.262 5.262 16 C -0.081 4.081 17 C 0.007 3.993 18 O -0.393 6.393 19 C -0.061 4.061 20 H 0.060 0.940 21 H 0.203 0.797 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.239 0.761 33 H 0.044 0.956 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.913 -17.866 0.007 18.529 hybrid contribution -0.758 0.667 -0.412 1.091 sum 4.154 -17.200 -0.405 17.699 Atomic orbital electron populations 1.69824 1.06624 1.26069 1.59736 1.25565 0.96412 1.01065 1.03771 0.85124 0.77679 0.79401 0.77488 1.21271 1.22044 1.19539 1.19596 0.91319 0.85192 1.40923 0.90951 1.42561 1.05355 1.00990 1.88830 1.20311 0.93880 0.84466 0.94293 0.94492 1.22121 0.99418 0.97074 0.98230 1.21524 0.98529 0.93477 1.00929 1.22203 0.98417 0.99083 0.87379 1.61814 1.45424 1.02123 1.16853 1.22269 0.94836 0.92125 0.98891 1.22245 0.88285 0.95002 0.93787 1.86607 1.40813 1.42625 1.69231 1.22072 0.94520 0.89731 0.99742 0.93995 0.79739 0.93904 0.93782 0.91844 0.89750 0.88572 0.95015 0.92322 0.91393 0.92349 0.91161 0.76073 0.95620 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.07 13.06 21.65 0.28 -60.79 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 3 Si 0.97 47.48 29.55 68.60 2.03 49.50 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.24 -13.86 9.93 84.03 0.83 -13.02 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.74 -39.45 5.13 -322.69 -1.65 -41.11 16 10 C 0.18 7.78 2.93 45.04 0.13 7.91 16 11 H 0.04 1.73 8.08 -2.39 -0.02 1.71 16 12 C -0.13 -4.86 5.58 30.67 0.17 -4.69 16 13 C -0.11 -3.03 6.09 30.65 0.19 -2.84 16 14 C 0.06 1.45 5.30 86.33 0.46 1.91 16 15 N -0.54 -16.29 4.60 -896.35 -4.13 -20.42 16 16 C 0.05 1.13 5.34 86.30 0.46 1.59 16 17 C 0.08 1.53 7.11 71.98 0.51 2.05 16 18 O -0.59 -12.85 13.61 -148.98 -2.03 -14.88 16 19 C 0.07 2.54 4.93 86.33 0.43 2.96 16 20 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 21 H 0.37 21.10 7.80 -92.71 -0.72 20.38 16 22 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.10 1.96 6.13 -2.39 -0.01 1.95 16 27 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 1.24 8.12 -2.39 -0.02 1.23 16 29 H 0.07 1.81 7.98 -2.38 -0.02 1.79 16 30 H 0.06 0.90 6.23 -2.38 -0.01 0.88 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.39 4.51 9.12 -74.05 -0.68 3.84 16 33 H 0.03 0.95 8.14 -2.39 -0.02 0.94 16 34 H 0.06 2.32 8.01 -2.39 -0.02 2.30 16 Total: -1.00 -69.59 274.60 -2.16 -71.75 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -0.31 Total: 24.12 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 3.65 Total: -8.18 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -5.50 Total: -122.31 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -2.03 Total: -14.88 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.50 kcal Total: -69.59 -2.16 -71.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308424225.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.452 kcal (2) G-P(sol) polarization free energy of solvation -69.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds