Wall clock time and date at job start Mon Mar 30 2020 02:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00005 * 2 1 4 4 H 1.48500 * 109.46891 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46925 * 119.99839 * 3 2 1 6 6 H 1.48496 * 109.47581 * 239.99800 * 3 2 1 7 7 C 1.38808 * 120.00323 * 180.27538 * 2 1 3 8 8 H 1.07999 * 120.00671 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99616 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99725 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.50508 * 324.99418 * 10 9 7 12 12 C 1.53117 * 109.50484 * 85.07653 * 10 9 7 13 13 C 1.53121 * 109.15864 * 177.59053 * 12 10 9 14 14 C 1.53026 * 109.28073 * 302.34535 * 13 12 10 15 15 N 1.46849 * 109.52333 * 59.18325 * 14 13 12 16 16 C 1.46899 * 111.00288 * 174.15958 * 15 14 13 17 17 C 1.52993 * 109.47366 * 195.88896 * 16 15 14 18 18 O 1.42902 * 109.46978 * 64.17479 * 17 16 15 19 19 C 1.46848 * 111.22835 * 298.27191 * 15 14 13 20 20 H 0.97005 * 120.00050 * 359.72558 * 1 2 3 21 21 H 0.97000 * 120.00257 * 359.97438 * 9 7 2 22 22 H 1.08994 * 109.52350 * 297.49871 * 12 10 9 23 23 H 1.09001 * 109.52074 * 57.62884 * 12 10 9 24 24 H 1.08997 * 109.50034 * 62.29104 * 13 12 10 25 25 H 1.09001 * 109.50051 * 182.39973 * 13 12 10 26 26 H 1.09011 * 109.46334 * 179.19302 * 14 13 12 27 27 H 1.08999 * 109.46806 * 299.16414 * 14 13 12 28 28 H 1.09007 * 109.47212 * 315.89183 * 16 15 14 29 29 H 1.09005 * 109.47260 * 75.88480 * 16 15 14 30 30 H 1.09002 * 109.47140 * 184.16753 * 17 16 15 31 31 H 1.08997 * 109.47364 * 304.17059 * 17 16 15 32 32 H 0.96697 * 114.00137 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.43462 * 301.68880 * 19 15 14 34 34 H 1.09002 * 109.49664 * 181.71928 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6965 -1.2124 7 6 2.0103 -1.2021 -0.0058 8 1 3.0903 -1.2021 -0.0054 9 7 1.3256 -2.3880 -0.0120 10 6 2.0581 -3.6567 -0.0175 11 1 2.9693 -3.5482 -0.6057 12 6 2.4199 -4.0444 1.4189 13 6 3.1318 -5.4000 1.4093 14 6 2.2233 -6.4433 0.7552 15 7 1.9067 -6.0270 -0.6170 16 6 1.1503 -7.0702 -1.3224 17 6 1.1798 -6.7926 -2.8267 18 8 2.5237 -6.8895 -3.3027 19 6 1.1810 -4.7504 -0.6313 20 1 -0.4850 0.8401 0.0040 21 1 0.3556 -2.3880 -0.0120 22 1 3.0803 -3.2891 1.8447 23 1 1.5115 -4.1132 2.0173 24 1 4.0600 -5.3196 0.8435 25 1 3.3541 -5.7015 2.4330 26 1 2.7331 -7.4066 0.7339 27 1 1.3012 -6.5331 1.3294 28 1 1.6006 -8.0428 -1.1235 29 1 0.1178 -7.0696 -0.9730 30 1 0.5579 -7.5236 -3.3433 31 1 0.7977 -5.7900 -3.0187 32 1 2.6180 -6.7246 -4.2508 33 1 0.2634 -4.8483 -0.0511 34 1 0.9340 -4.4838 -1.6589 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308424229.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:44 Heat of formation + Delta-G solvation = -64.684641 kcal Electronic energy + Delta-G solvation = -14874.977233 eV Core-core repulsion = 12420.714797 eV Total energy + Delta-G solvation = -2454.262435 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.16827 -37.68673 -36.24803 -34.17985 -32.87030 -29.98426 -29.49247 -25.80582 -25.12272 -22.99548 -22.12356 -20.73958 -19.18158 -18.27089 -17.37778 -16.53496 -16.07446 -15.49167 -15.45228 -15.14372 -14.86960 -14.54543 -14.29150 -13.73522 -13.43804 -13.07026 -12.87723 -12.82242 -12.29488 -12.20186 -12.09812 -11.93842 -11.64604 -11.48052 -11.18728 -10.85907 -10.76460 -9.19795 -9.02132 -7.94920 -5.23887 1.46369 1.49673 1.55760 2.53900 2.91127 3.37882 3.51044 3.87398 3.98715 4.08699 4.23423 4.30190 4.35349 4.44014 4.49622 4.56802 4.65923 4.72949 4.85885 4.88324 4.96701 5.04684 5.16339 5.18128 5.44687 5.49544 5.58514 6.13477 6.23599 6.29188 7.02105 7.32751 8.07297 8.32220 9.28508 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036552 B = 0.007423 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.848690 B = 3770.970744 C = 4128.891395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.293 1.293 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.737 5.737 10 C 0.179 3.821 11 H 0.037 0.963 12 C -0.129 4.129 13 C -0.106 4.106 14 C 0.059 3.941 15 N -0.538 5.538 16 C 0.051 3.949 17 C 0.080 3.920 18 O -0.581 6.581 19 C 0.068 3.932 20 H 0.251 0.749 21 H 0.371 0.629 22 H 0.041 0.959 23 H 0.043 0.957 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.032 0.968 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.389 0.611 33 H 0.024 0.976 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.832 -15.686 -2.433 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.220 1.220 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.377 5.377 10 C 0.071 3.929 11 H 0.055 0.945 12 C -0.169 4.169 13 C -0.145 4.145 14 C -0.068 4.068 15 N -0.263 5.263 16 C -0.077 4.077 17 C 0.002 3.998 18 O -0.388 6.388 19 C -0.061 4.061 20 H 0.060 0.940 21 H 0.203 0.797 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.050 0.950 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.237 0.763 33 H 0.042 0.958 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.528 -15.638 -2.071 16.164 hybrid contribution -1.071 1.310 -0.123 1.696 sum 2.457 -14.328 -2.194 14.702 Atomic orbital electron populations 1.69811 1.06557 1.26119 1.59622 1.25548 0.96412 1.01003 1.03773 0.85217 0.77228 0.79192 0.78178 1.21950 1.20450 1.20441 1.19547 0.91290 0.85205 1.41070 0.91022 1.42548 1.05340 1.00956 1.88844 1.20303 0.93928 0.84532 0.94172 0.94516 1.22129 0.99390 0.96994 0.98400 1.21526 0.98541 0.93531 1.00885 1.22142 0.98361 0.98826 0.87512 1.61806 1.45595 1.02290 1.16597 1.22247 0.96808 0.95435 0.93179 1.22241 0.83805 0.99676 0.94116 1.86529 1.27918 1.94372 1.29953 1.22114 0.94357 0.89755 0.99885 0.93995 0.79719 0.93965 0.93795 0.91847 0.89828 0.88927 0.94954 0.89038 0.92605 0.90911 0.94854 0.76285 0.95762 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 3 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 4 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 7 C -0.24 -13.78 9.93 84.03 0.83 -12.95 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -38.96 5.12 -322.69 -1.65 -40.62 16 10 C 0.18 7.70 2.93 45.04 0.13 7.83 16 11 H 0.04 1.70 8.08 -2.39 -0.02 1.69 16 12 C -0.13 -4.90 5.59 30.67 0.17 -4.73 16 13 C -0.11 -3.09 6.09 30.64 0.19 -2.90 16 14 C 0.06 1.56 5.44 86.32 0.47 2.03 16 15 N -0.54 -16.20 4.55 -896.35 -4.08 -20.28 16 16 C 0.05 1.21 5.36 86.30 0.46 1.68 16 17 C 0.08 1.79 7.18 71.98 0.52 2.31 16 18 O -0.58 -14.36 13.59 -148.98 -2.03 -16.39 16 19 C 0.07 2.45 4.78 86.33 0.41 2.86 16 20 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 21 H 0.37 20.84 7.80 -92.71 -0.72 20.12 16 22 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.09 2.03 7.96 -2.38 -0.02 2.01 16 27 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 1.93 7.87 -2.38 -0.02 1.91 16 29 H 0.06 1.22 8.06 -2.38 -0.02 1.20 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.03 0.85 6.51 -2.39 -0.02 0.83 16 32 H 0.39 6.14 9.12 -74.06 -0.68 5.46 16 33 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 2.40 6.42 -2.39 -0.02 2.39 16 Total: -1.00 -67.93 274.96 -2.11 -70.03 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.31 Total: 26.04 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 3.65 Total: -7.82 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -5.45 Total: -120.99 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -2.03 Total: -16.39 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -67.93 -2.11 -70.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308424229.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.347 kcal (2) G-P(sol) polarization free energy of solvation -67.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds