Wall clock time and date at job start Mon Mar 30 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99993 * 2 1 4 4 H 1.48503 * 109.47327 * 239.99925 * 3 2 1 5 5 H 1.48505 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47290 * 120.00169 * 3 2 1 7 7 C 1.38814 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99704 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99477 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46883 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.46846 * 111.00018 * 294.20961 * 12 11 10 14 14 C 1.53033 * 109.52460 * 174.16134 * 13 12 11 15 15 C 1.53124 * 109.27811 * 59.18358 * 14 13 12 16 16 O 1.42899 * 109.52483 * 182.44119 * 15 14 13 17 17 C 1.53125 * 109.15751 * 302.34732 * 15 14 13 18 18 C 1.46851 * 110.99682 * 170.00115 * 12 11 10 19 19 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 20 20 H 0.96992 * 120.00556 * 0.02562 * 9 7 2 21 21 H 1.09001 * 109.46891 * 60.00526 * 10 9 7 22 22 H 1.08993 * 109.47378 * 299.99898 * 10 9 7 23 23 H 1.09001 * 109.46801 * 300.00349 * 11 10 9 24 24 H 1.09001 * 109.46998 * 59.99945 * 11 10 9 25 25 H 1.09002 * 109.46555 * 294.18280 * 13 12 11 26 26 H 1.09001 * 109.46296 * 54.14881 * 13 12 11 27 27 H 1.08997 * 109.50475 * 299.23909 * 14 13 12 28 28 H 1.09002 * 109.50799 * 179.12007 * 14 13 12 29 29 H 1.08998 * 109.57589 * 62.27874 * 15 14 13 30 30 H 0.96693 * 113.99955 * 299.68250 * 16 15 14 31 31 H 1.09005 * 109.50073 * 297.71107 * 17 15 14 32 32 H 1.08991 * 109.50379 * 177.59621 * 17 15 14 33 33 H 1.08989 * 109.46428 * 305.85572 * 18 12 11 34 34 H 1.09002 * 109.45912 * 65.83533 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0639 -4.8198 -0.0021 12 7 1.7984 -6.0919 -0.0026 13 6 2.5484 -6.2661 -1.2530 14 6 3.4127 -7.5255 -1.1599 15 6 2.5128 -8.7388 -0.9095 16 8 3.3191 -9.9097 -0.7650 17 6 1.7071 -8.5109 0.3726 18 6 0.8923 -7.2228 0.2351 19 1 -0.4850 0.8400 -0.0004 20 1 0.3557 -2.3881 -0.0005 21 1 2.6854 -3.7149 0.8879 22 1 2.6841 -3.7141 -0.8921 23 1 0.4376 -4.7625 0.8882 24 1 0.4369 -4.7614 -0.8918 25 1 1.8504 -6.3652 -2.0844 26 1 3.1874 -5.3984 -1.4171 27 1 4.1203 -7.4213 -0.3374 28 1 3.9573 -7.6631 -2.0940 29 1 1.8310 -8.8675 -1.7501 30 1 3.8574 -10.1149 -1.5416 31 1 2.3879 -8.4221 1.2192 32 1 1.0333 -9.3523 0.5334 33 1 0.3285 -7.0501 1.1517 34 1 0.2022 -7.3176 -0.6033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000321286197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:20 Heat of formation + Delta-G solvation = -67.772143 kcal Electronic energy + Delta-G solvation = -14440.027577 eV Core-core repulsion = 11985.631258 eV Total energy + Delta-G solvation = -2454.396319 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.32843 -37.79029 -36.40323 -33.93084 -32.30393 -31.89646 -28.81928 -25.70355 -24.46396 -23.91788 -22.17269 -20.81739 -19.23426 -18.24267 -17.17384 -16.52785 -16.30985 -15.77120 -15.49253 -15.23356 -14.89505 -14.82707 -14.35779 -13.79048 -13.17359 -13.05461 -12.94366 -12.70124 -12.47356 -12.21991 -12.20208 -12.05337 -11.98613 -11.72876 -11.28147 -10.95427 -10.72100 -9.32886 -9.03334 -7.96946 -5.27084 1.47411 1.51102 1.57320 2.52624 2.83855 3.29204 3.36676 3.78279 3.79506 4.04551 4.15374 4.22664 4.26585 4.29275 4.40791 4.53592 4.61896 4.66777 4.80293 4.89056 4.92730 5.06855 5.13887 5.16448 5.20245 5.35466 5.46557 6.03638 6.15127 6.25806 6.89972 7.31091 8.04716 8.29352 9.26610 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.075598 B = 0.005127 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.291510 B = 5460.041436 C = 5702.582260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.978 3.022 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.160 3.840 11 C 0.066 3.934 12 N -0.544 5.544 13 C 0.051 3.949 14 C -0.139 4.139 15 C 0.106 3.894 16 O -0.582 6.582 17 C -0.106 4.106 18 C 0.058 3.942 19 H 0.253 0.747 20 H 0.374 0.626 21 H 0.020 0.980 22 H 0.021 0.979 23 H 0.073 0.927 24 H 0.031 0.969 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.394 0.606 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.540 -18.198 -3.328 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.806 3.194 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.034 3.966 11 C -0.062 4.062 12 N -0.270 5.270 13 C -0.077 4.077 14 C -0.177 4.177 15 C 0.047 3.953 16 O -0.390 6.390 17 C -0.144 4.144 18 C -0.069 4.069 19 H 0.062 0.938 20 H 0.205 0.795 21 H 0.038 0.962 22 H 0.039 0.961 23 H 0.091 0.909 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.244 0.756 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.752 -18.109 -2.362 18.870 hybrid contribution -0.408 1.182 -1.130 1.685 sum 4.344 -16.927 -3.492 17.821 Atomic orbital electron populations 1.69813 1.06676 1.26340 1.59210 1.25612 0.96456 1.01219 1.03296 0.85157 0.77206 0.78786 0.78278 1.20233 1.21879 1.20318 1.19591 0.91507 0.85261 1.41862 0.90736 1.42495 1.05675 1.01227 1.89637 1.20666 0.93884 0.84327 0.97750 1.21972 0.95097 0.88567 1.00595 1.61843 1.27830 1.01587 1.35731 1.22141 0.96878 0.98902 0.89762 1.22260 0.98490 0.93791 1.03174 1.21826 0.91672 0.84054 0.97742 1.86470 1.61620 1.45272 1.45642 1.21504 0.98836 0.96462 0.97594 1.22090 0.93747 0.89527 1.01570 0.93844 0.79454 0.96203 0.96105 0.90889 0.95098 0.94503 0.91001 0.91465 0.89212 0.92002 0.75598 0.91565 0.89765 0.89788 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.09 13.06 21.65 0.28 -59.81 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 3 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.75 -39.56 5.60 -343.43 -1.92 -41.49 16 10 C 0.16 6.79 6.19 86.38 0.53 7.33 16 11 C 0.07 2.26 5.07 86.31 0.44 2.70 16 12 N -0.54 -15.51 4.66 -896.37 -4.17 -19.68 16 13 C 0.05 1.29 5.29 86.32 0.46 1.75 16 14 C -0.14 -2.77 5.72 30.65 0.18 -2.60 16 15 C 0.11 1.99 3.54 30.68 0.11 2.10 16 16 O -0.58 -10.60 13.32 -148.98 -1.99 -12.59 16 17 C -0.11 -2.20 5.75 30.65 0.18 -2.03 16 18 C 0.06 1.35 5.46 86.32 0.47 1.82 16 19 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 20 H 0.37 20.77 7.67 -92.71 -0.71 20.06 16 21 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.02 0.88 6.43 -2.39 -0.02 0.87 16 23 H 0.07 2.53 7.99 -2.39 -0.02 2.51 16 24 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 25 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 2.02 6.21 -2.39 -0.01 2.01 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.39 3.67 9.09 -74.06 -0.67 3.00 16 31 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.89 8.01 -2.39 -0.02 1.87 16 34 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -66.72 274.82 -2.41 -69.12 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.30 Total: 22.21 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 3.67 Total: -6.34 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -5.82 Total: -120.98 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.99 Total: -12.59 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -66.72 -2.41 -69.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000321286197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.352 kcal (2) G-P(sol) polarization free energy of solvation -66.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds