Wall clock time and date at job start Mon Mar 30 2020 03:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00156 * 2 1 4 4 C 1.53003 * 109.47003 * 200.09204 * 3 2 1 5 5 O 1.42894 * 109.47136 * 63.67820 * 4 3 2 6 6 C 1.42897 * 114.00338 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47728 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99860 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00577 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99760 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00197 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47244 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46861 * 120.00281 * 11 9 7 14 14 H 1.48500 * 109.47058 * 240.00232 * 11 9 7 15 15 C 1.46904 * 110.99830 * 123.95293 * 2 1 3 16 16 C 1.53518 * 114.16841 * 56.04666 * 15 2 1 17 17 N 1.47486 * 87.92964 * 139.67005 * 16 15 2 18 18 C 1.47481 * 87.83578 * 332.98911 * 17 16 15 19 19 H 1.09001 * 109.46873 * 290.98283 * 1 2 3 20 20 H 1.08997 * 109.46801 * 50.98049 * 1 2 3 21 21 H 1.08998 * 109.47228 * 170.97731 * 1 2 3 22 22 H 1.08994 * 109.47246 * 320.09028 * 3 2 1 23 23 H 1.08997 * 109.46900 * 80.09438 * 3 2 1 24 24 H 1.09002 * 109.46870 * 183.67431 * 4 3 2 25 25 H 1.09002 * 109.47367 * 303.67165 * 4 3 2 26 26 H 1.09005 * 109.47028 * 299.99696 * 6 5 4 27 27 H 1.09007 * 109.47183 * 59.99581 * 6 5 4 28 28 H 0.97001 * 119.99832 * 179.97438 * 10 9 7 29 29 H 1.08995 * 113.38262 * 282.96639 * 15 2 1 30 30 H 1.08995 * 113.47335 * 24.90243 * 16 15 2 31 31 H 1.08991 * 113.52877 * 254.44301 * 16 15 2 32 32 H 1.00900 * 110.99966 * 84.68226 * 17 16 15 33 33 H 1.08996 * 113.47408 * 141.78541 * 18 17 16 34 34 H 1.09008 * 113.47194 * 272.24343 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4430 1.3620 -0.4956 5 8 3.4791 0.9149 -1.8523 6 6 4.7921 0.8683 -2.4142 7 6 4.7118 0.3854 -3.8395 8 1 3.7539 0.1382 -4.2727 9 6 5.8612 0.2590 -4.5904 10 7 7.0277 0.5595 -4.0627 11 14 5.7616 -0.3403 -6.3568 12 1 4.3444 -0.6097 -6.7090 13 1 6.3074 0.7008 -7.2642 14 1 6.5539 -1.5880 -6.5016 15 6 1.9954 -0.7660 1.1376 16 6 1.4903 -2.2140 1.2080 17 7 2.8538 -2.6139 1.6034 18 6 3.3517 -1.4341 0.8718 19 1 -0.3633 0.3680 0.9595 20 1 -0.3633 0.6470 -0.7984 21 1 -0.3633 -1.0149 -0.1612 22 1 1.3898 1.9931 -0.6593 23 1 1.9606 1.7739 1.0123 24 1 3.8547 2.3694 -0.4339 25 1 4.0351 0.6890 0.1247 26 1 5.2322 1.8654 -2.3924 27 1 5.4118 0.1848 -1.8337 28 1 7.8364 0.4702 -4.5909 29 1 1.9409 -0.2278 2.0839 30 1 1.1834 -2.6142 0.2418 31 1 0.7465 -2.3779 1.9876 32 1 2.9882 -2.5061 2.5976 33 1 4.1855 -0.9363 1.3668 34 1 3.5415 -1.6264 -0.1843 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385198939.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:08 Heat of formation + Delta-G solvation = -27.768571 kcal Electronic energy + Delta-G solvation = -14743.532692 eV Core-core repulsion = 12290.871058 eV Total energy + Delta-G solvation = -2452.661634 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.04983 -38.57089 -36.65462 -34.85678 -31.15636 -28.98295 -27.97038 -26.59284 -25.26621 -24.42366 -22.47108 -21.06030 -18.62059 -17.70316 -17.48397 -16.83345 -16.71686 -16.06256 -15.58048 -15.46811 -14.76905 -14.23669 -13.76597 -13.61573 -13.60525 -13.30248 -13.10036 -13.05463 -12.73425 -12.63943 -12.25431 -12.12507 -11.71889 -11.40435 -11.21748 -10.83952 -10.14942 -9.71345 -9.17279 -8.30908 -6.42446 1.39695 1.41486 1.56288 2.36014 2.94678 3.02833 3.17858 3.24750 3.39203 3.88467 4.11276 4.24101 4.41117 4.46133 4.56879 4.59582 4.62517 4.69150 4.79386 4.83377 4.84613 4.92250 4.99028 5.08273 5.16410 5.21624 5.57251 5.99424 6.10965 6.17417 6.42844 6.59604 6.89517 7.30079 8.81814 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035319 B = 0.006893 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.578433 B = 4061.394581 C = 4232.066327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.545 5.545 3 C 0.068 3.932 4 C 0.056 3.944 5 O -0.393 6.393 6 C 0.212 3.788 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.005 3.995 10 N -0.932 5.932 11 Si 0.982 3.018 12 H -0.265 1.265 13 H -0.270 1.270 14 H -0.272 1.272 15 C 0.014 3.986 16 C 0.033 3.967 17 N -0.660 5.660 18 C 0.024 3.976 19 H 0.040 0.960 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.039 0.961 26 H -0.018 1.018 27 H -0.019 1.019 28 H 0.270 0.730 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.347 0.653 33 H 0.066 0.934 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.777 -1.065 12.274 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.270 5.270 3 C -0.060 4.060 4 C -0.022 4.022 5 O -0.312 6.312 6 C 0.136 3.864 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.193 4.193 10 N -0.572 5.572 11 Si 0.805 3.195 12 H -0.189 1.189 13 H -0.195 1.195 14 H -0.197 1.197 15 C -0.096 4.096 16 C -0.097 4.097 17 N -0.288 5.288 18 C -0.107 4.107 19 H 0.059 0.941 20 H 0.084 0.916 21 H 0.092 0.908 22 H 0.097 0.903 23 H 0.090 0.910 24 H 0.060 0.940 25 H 0.058 0.942 26 H -0.001 1.001 27 H -0.002 1.002 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.162 0.838 33 H 0.085 0.915 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.385 -2.074 11.281 16.162 hybrid contribution 0.279 1.263 0.553 1.407 sum -11.106 -0.811 11.834 16.249 Atomic orbital electron populations 1.22342 0.85638 1.02933 1.00777 1.62058 1.09061 1.13827 1.42081 1.22106 0.94002 0.89770 1.00113 1.22634 0.97819 0.97321 0.84411 1.87891 1.29671 1.87600 1.26058 1.19743 0.80232 0.93312 0.93073 1.21414 0.94069 1.45280 0.97360 0.92251 1.25955 0.94235 0.95066 1.04032 1.70079 0.98742 1.49201 1.39141 0.85157 0.78684 0.78228 0.77476 1.18890 1.19477 1.19707 1.24832 0.96402 0.95398 0.92923 1.23548 0.92529 0.91048 1.02535 1.65550 1.08725 1.41203 1.13286 1.23540 0.96583 0.90603 0.99959 0.94134 0.91604 0.90805 0.90293 0.91018 0.94023 0.94247 1.00062 1.00173 0.92108 0.89467 0.89383 0.88670 0.83781 0.91541 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.25 127.69 1.18 1.84 16 2 N -0.55 -15.56 4.63 -895.99 -4.15 -19.71 16 3 C 0.07 1.96 5.40 86.30 0.47 2.42 16 4 C 0.06 2.11 5.94 71.98 0.43 2.54 16 5 O -0.39 -19.85 10.25 -148.98 -1.53 -21.37 16 6 C 0.21 12.32 5.69 71.23 0.41 12.73 16 7 C -0.54 -33.53 9.43 25.60 0.24 -33.29 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 9 C 0.01 0.31 5.46 84.65 0.46 0.77 16 10 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 11 Si 0.98 45.71 29.54 68.60 2.03 47.74 16 12 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 C 0.01 0.35 3.37 45.37 0.15 0.50 16 16 C 0.03 0.75 7.29 83.58 0.61 1.36 16 17 N -0.66 -16.73 8.76 -541.95 -4.75 -21.48 16 18 C 0.02 0.71 6.47 83.58 0.54 1.25 16 19 H 0.04 0.70 8.13 -2.39 -0.02 0.68 16 20 H 0.07 1.46 7.85 -2.39 -0.02 1.45 16 21 H 0.07 1.50 7.28 -2.39 -0.02 1.48 16 22 H 0.08 2.27 7.74 -2.39 -0.02 2.25 16 23 H 0.07 1.60 7.87 -2.39 -0.02 1.58 16 24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.04 1.47 5.57 -2.39 -0.01 1.46 16 26 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 27 H -0.02 -1.19 8.14 -2.38 -0.02 -1.21 16 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.09 1.74 7.97 -2.39 -0.02 1.72 16 30 H 0.09 2.30 7.89 -2.39 -0.02 2.28 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.35 6.73 8.85 -89.69 -0.79 5.94 16 33 H 0.07 1.91 7.60 -2.39 -0.02 1.90 16 34 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 Total: -1.00 -70.06 279.66 -3.35 -73.41 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.27 Total: 8.46 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 4.49 Total: -9.88 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -8.61 Total: -98.36 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.53 Total: -21.37 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -70.06 -3.35 -73.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385198939.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.638 kcal (2) G-P(sol) polarization free energy of solvation -70.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds