Wall clock time and date at job start Mon Mar 30 2020 02:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99907 * 2 1 4 4 H 1.48509 * 109.46831 * 269.99672 * 3 2 1 5 5 H 1.48499 * 109.47362 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47015 * 150.00250 * 3 2 1 7 7 C 1.37879 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99598 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99882 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46827 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99621 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46569 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47227 * 64.64549 * 12 11 10 14 14 C 1.46957 * 110.99853 * 75.70293 * 13 12 11 15 15 C 1.53058 * 109.36173 * 183.19034 * 14 13 12 16 16 N 1.46959 * 109.37960 * 301.58907 * 15 14 13 17 17 C 1.46996 * 110.85707 * 59.30783 * 16 15 14 18 18 C 1.46953 * 110.99815 * 199.50391 * 13 12 11 19 19 H 0.97006 * 119.99938 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47763 * 59.99875 * 9 7 2 21 21 H 1.09002 * 109.47112 * 299.99136 * 9 7 2 22 22 H 1.08994 * 109.47530 * 59.99959 * 11 10 9 23 23 H 1.09000 * 109.47046 * 299.98978 * 11 10 9 24 24 H 1.08995 * 109.47411 * 304.63937 * 12 11 10 25 25 H 1.09001 * 109.46633 * 184.64257 * 12 11 10 26 26 H 1.08996 * 109.49122 * 63.22601 * 14 13 12 27 27 H 1.09001 * 109.48954 * 303.15181 * 14 13 12 28 28 H 1.08996 * 109.48969 * 61.56202 * 15 14 13 29 29 H 1.08996 * 109.48719 * 181.61403 * 15 14 13 30 30 H 1.00897 * 110.99690 * 183.20145 * 16 15 14 31 31 H 1.09004 * 109.48034 * 180.72092 * 17 16 15 32 32 H 1.09002 * 109.49997 * 60.68060 * 17 16 15 33 33 H 1.08997 * 109.49038 * 296.77810 * 18 13 12 34 34 H 1.08995 * 109.49038 * 56.82268 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0017 11 6 1.5650 -4.8754 0.0024 12 6 2.6480 -5.9562 0.0030 13 7 3.4136 -5.8816 1.2546 14 6 2.6474 -6.4450 2.3750 15 6 3.4447 -6.2766 3.6706 16 7 4.7442 -6.9492 3.5344 17 6 5.5103 -6.3857 2.4135 18 6 4.7130 -6.5541 1.1180 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8904 22 1 0.9453 -4.9831 -0.8877 23 1 0.9446 -4.9818 0.8923 24 1 3.3179 -5.7999 -0.8425 25 1 2.1816 -6.9379 -0.0796 26 1 2.4658 -7.5046 2.1949 27 1 1.6950 -5.9223 2.4635 28 1 3.6029 -5.2158 3.8649 29 1 2.8910 -6.7194 4.4984 30 1 5.2697 -6.8979 4.3942 31 1 6.4627 -6.9083 2.3250 32 1 5.6923 -5.3261 2.5934 33 1 4.5549 -7.6149 0.9236 34 1 5.2664 -6.1112 0.2899 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385228366.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:06 Heat of formation + Delta-G solvation = -41.386750 kcal Electronic energy + Delta-G solvation = -14587.063480 eV Core-core repulsion = 12133.811317 eV Total energy + Delta-G solvation = -2453.252163 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.93302 -36.57517 -34.30915 -32.60309 -30.82808 -29.31087 -26.87100 -24.87063 -23.37813 -22.24196 -21.16520 -19.66047 -16.87693 -16.33280 -15.58915 -15.25041 -14.65417 -14.51885 -14.48878 -14.16059 -13.78970 -13.47288 -12.88668 -12.29512 -11.89955 -11.71090 -11.31206 -11.17988 -11.01086 -10.83873 -10.76931 -10.54517 -10.27749 -9.93314 -9.02842 -8.73916 -8.55437 -8.08465 -7.99648 -6.05885 -4.06613 3.33194 3.37865 3.43916 4.04648 4.20088 4.39669 4.89988 4.96731 5.20215 5.27370 5.30520 5.39684 5.46029 5.54886 5.67493 5.70489 5.85606 5.92904 5.95641 6.08710 6.13033 6.21063 6.34146 6.88814 7.15958 7.19994 7.31766 7.38343 7.50569 7.86045 8.23158 8.69283 9.08587 9.58051 11.05866 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.038596 B = 0.006301 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.295500 B = 4442.379379 C = 4704.999994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.381 6.381 11 C 0.069 3.931 12 C 0.061 3.939 13 N -0.526 5.526 14 C 0.057 3.943 15 C 0.058 3.942 16 N -0.694 5.694 17 C 0.058 3.942 18 C 0.059 3.941 19 H 0.263 0.737 20 H 0.002 0.998 21 H 0.002 0.998 22 H 0.038 0.962 23 H 0.034 0.966 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.340 0.660 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.750 -13.602 4.531 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.300 6.300 11 C -0.009 4.009 12 C -0.066 4.066 13 N -0.251 5.251 14 C -0.072 4.072 15 C -0.072 4.072 16 N -0.325 5.325 17 C -0.072 4.072 18 C -0.070 4.070 19 H 0.072 0.928 20 H 0.020 0.980 21 H 0.020 0.980 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.157 0.843 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.628 -13.466 4.256 15.601 hybrid contribution 0.067 0.893 0.190 0.916 sum 6.695 -12.573 4.446 14.922 Atomic orbital electron populations 1.69969 1.06095 1.27016 1.50937 1.24949 0.94959 0.99384 0.95308 0.86353 0.79687 0.82358 0.78186 1.20504 1.21130 1.19656 1.21071 0.94060 0.89404 1.50265 0.91587 1.20165 0.88867 0.83943 0.95057 1.87936 1.34667 1.12385 1.95009 1.22215 0.93825 0.86224 0.98639 1.22136 0.96326 0.96176 0.91998 1.62002 1.03448 1.55399 1.04248 1.22181 0.97048 0.97244 0.90679 1.21991 0.90402 0.97486 0.97300 1.60565 1.05465 1.58527 1.07978 1.21999 0.95894 0.98295 0.90991 1.22135 0.90924 0.96501 0.97393 0.92759 0.98045 0.97971 0.94403 0.94747 0.90298 0.94143 0.94700 0.90139 0.93744 0.90617 0.84279 0.90684 0.93857 0.94761 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.29 29.54 -169.99 -5.02 17.27 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -15.44 9.43 -34.44 -0.32 -15.77 16 8 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 9 C 0.19 5.51 5.69 36.00 0.20 5.71 16 10 O -0.38 -9.57 10.27 -35.23 -0.36 -9.93 16 11 C 0.07 1.34 6.13 37.16 0.23 1.57 16 12 C 0.06 0.97 5.39 -3.82 -0.02 0.95 16 13 N -0.53 -8.45 4.58 -234.47 -1.07 -9.53 16 14 C 0.06 0.81 5.43 -3.76 -0.02 0.79 16 15 C 0.06 0.74 6.72 -3.76 -0.03 0.71 16 16 N -0.69 -8.15 6.91 -113.60 -0.78 -8.93 16 17 C 0.06 0.70 6.72 -3.75 -0.03 0.68 16 18 C 0.06 0.80 5.57 -3.77 -0.02 0.77 16 19 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 20 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 21 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.03 0.65 6.74 -51.93 -0.35 0.30 16 24 H 0.08 1.24 7.85 -51.93 -0.41 0.83 16 25 H 0.04 0.55 8.00 -51.93 -0.42 0.13 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.20 6.72 -51.93 -0.35 0.85 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.34 3.25 8.90 -39.29 -0.35 2.90 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 1.03 8.00 -51.93 -0.42 0.62 16 LS Contribution 278.04 15.07 4.19 4.19 Total: -1.00 -32.52 278.04 -8.05 -40.57 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -5.64 Total: -3.82 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -0.10 Total: -3.06 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -1.12 Total: -45.21 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.36 Total: -9.93 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.52 -8.05 -40.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385228366.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.816 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds