Wall clock time and date at job start Mon Mar 30 2020 02:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99907 * 2 1 4 4 H 1.48509 * 109.46831 * 269.99672 * 3 2 1 5 5 H 1.48499 * 109.47362 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47015 * 150.00250 * 3 2 1 7 7 C 1.37879 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99598 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99882 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46827 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99621 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46569 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47227 * 64.64549 * 12 11 10 14 14 C 1.46957 * 110.99853 * 75.70293 * 13 12 11 15 15 C 1.53058 * 109.36173 * 183.19034 * 14 13 12 16 16 N 1.46959 * 109.37960 * 301.58907 * 15 14 13 17 17 C 1.46996 * 110.85707 * 59.30783 * 16 15 14 18 18 C 1.46953 * 110.99815 * 199.50391 * 13 12 11 19 19 H 0.97006 * 119.99938 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47763 * 59.99875 * 9 7 2 21 21 H 1.09002 * 109.47112 * 299.99136 * 9 7 2 22 22 H 1.08994 * 109.47530 * 59.99959 * 11 10 9 23 23 H 1.09000 * 109.47046 * 299.98978 * 11 10 9 24 24 H 1.08995 * 109.47411 * 304.63937 * 12 11 10 25 25 H 1.09001 * 109.46633 * 184.64257 * 12 11 10 26 26 H 1.08996 * 109.49122 * 63.22601 * 14 13 12 27 27 H 1.09001 * 109.48954 * 303.15181 * 14 13 12 28 28 H 1.08996 * 109.48969 * 61.56202 * 15 14 13 29 29 H 1.08996 * 109.48719 * 181.61403 * 15 14 13 30 30 H 1.00897 * 110.99690 * 183.20145 * 16 15 14 31 31 H 1.09004 * 109.48034 * 180.72092 * 17 16 15 32 32 H 1.09002 * 109.49997 * 60.68060 * 17 16 15 33 33 H 1.08997 * 109.49038 * 296.77810 * 18 13 12 34 34 H 1.08995 * 109.49038 * 56.82268 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0017 11 6 1.5650 -4.8754 0.0024 12 6 2.6480 -5.9562 0.0030 13 7 3.4136 -5.8816 1.2546 14 6 2.6474 -6.4450 2.3750 15 6 3.4447 -6.2766 3.6706 16 7 4.7442 -6.9492 3.5344 17 6 5.5103 -6.3857 2.4135 18 6 4.7130 -6.5541 1.1180 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8904 22 1 0.9453 -4.9831 -0.8877 23 1 0.9446 -4.9818 0.8923 24 1 3.3179 -5.7999 -0.8425 25 1 2.1816 -6.9379 -0.0796 26 1 2.4658 -7.5046 2.1949 27 1 1.6950 -5.9223 2.4635 28 1 3.6029 -5.2158 3.8649 29 1 2.8910 -6.7194 4.4984 30 1 5.2697 -6.8979 4.3942 31 1 6.4627 -6.9083 2.3250 32 1 5.6923 -5.3261 2.5934 33 1 4.5549 -7.6149 0.9236 34 1 5.2664 -6.1112 0.2899 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385228366.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:06 Heat of formation + Delta-G solvation = -67.202977 kcal Electronic energy + Delta-G solvation = -14588.182956 eV Core-core repulsion = 12133.811317 eV Total energy + Delta-G solvation = -2454.371638 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.07943 -38.38192 -35.60682 -34.77150 -31.87365 -30.84508 -28.92540 -26.13965 -24.51013 -24.38786 -22.53933 -20.73873 -18.62715 -17.94915 -17.41752 -16.70721 -16.38851 -15.79262 -15.70135 -15.49612 -15.20758 -14.93158 -14.50840 -13.73991 -13.50133 -13.10301 -13.02760 -12.73783 -12.60334 -12.42145 -12.23330 -12.08003 -11.74823 -11.51415 -11.23748 -10.85539 -10.18027 -9.54861 -9.15837 -8.32172 -6.44294 1.38816 1.42086 1.54227 2.34794 2.90186 3.01272 3.24530 3.26864 3.93525 4.05262 4.15391 4.27255 4.38009 4.40139 4.46174 4.52315 4.61395 4.64697 4.81852 4.83937 4.90027 4.95349 5.00844 5.10364 5.18840 5.55040 5.88213 5.97161 6.08281 6.21012 6.46946 6.57118 6.86469 7.28053 8.80340 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.038596 B = 0.006301 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.295500 B = 4442.379379 C = 4704.999994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.396 6.396 11 C 0.060 3.940 12 C 0.070 3.930 13 N -0.556 5.556 14 C 0.056 3.944 15 C 0.060 3.940 16 N -0.689 5.689 17 C 0.059 3.941 18 C 0.059 3.941 19 H 0.271 0.729 20 H -0.016 1.016 21 H -0.019 1.019 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.097 0.903 30 H 0.354 0.646 31 H 0.102 0.898 32 H 0.023 0.977 33 H 0.045 0.955 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.855 -13.953 4.780 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.315 6.315 11 C -0.018 4.018 12 C -0.058 4.058 13 N -0.282 5.282 14 C -0.072 4.072 15 C -0.069 4.069 16 N -0.322 5.322 17 C -0.070 4.070 18 C -0.069 4.069 19 H 0.080 0.920 20 H 0.002 0.998 21 H -0.002 1.002 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.116 0.884 30 H 0.173 0.827 31 H 0.120 0.880 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.739 -13.850 4.513 16.495 hybrid contribution -0.316 0.911 0.122 0.972 sum 7.424 -12.939 4.635 15.621 Atomic orbital electron populations 1.70074 1.07756 1.28621 1.50630 1.25972 0.95978 1.03387 0.93919 0.85183 0.78309 0.76987 0.78921 1.19106 1.19775 1.19046 1.21378 0.93986 0.90944 1.52085 0.92280 1.19783 0.88674 0.85033 0.93082 1.87891 1.34719 1.13895 1.95041 1.22568 0.95502 0.84594 0.99100 1.22043 0.95503 0.95917 0.92308 1.61957 1.04685 1.56982 1.04575 1.22188 0.96572 0.97534 0.90870 1.21961 0.91238 0.96429 0.97299 1.60572 1.05169 1.57753 1.08679 1.22020 0.96864 0.97544 0.90604 1.22186 0.89758 0.96809 0.98166 0.92040 0.99798 1.00172 0.93438 0.94711 0.90206 0.91086 0.93468 0.91550 0.96098 0.88438 0.82719 0.88028 0.95857 0.93634 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.98 45.40 29.54 68.60 2.03 47.43 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.55 -33.75 9.43 25.60 0.24 -33.51 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 9 C 0.21 12.29 5.69 71.23 0.41 12.69 16 10 O -0.40 -20.39 10.27 -148.98 -1.53 -21.92 16 11 C 0.06 2.33 6.13 71.98 0.44 2.77 16 12 C 0.07 2.15 5.39 86.30 0.46 2.61 16 13 N -0.56 -17.43 4.58 -895.72 -4.11 -21.54 16 14 C 0.06 1.56 5.43 86.31 0.47 2.03 16 15 C 0.06 1.48 6.72 86.31 0.58 2.06 16 16 N -0.69 -14.80 6.91 -513.33 -3.54 -18.34 16 17 C 0.06 1.34 6.72 86.30 0.58 1.92 16 18 C 0.06 1.49 5.57 86.31 0.48 1.97 16 19 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 20 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 21 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 22 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 23 H 0.03 1.34 6.74 -2.39 -0.02 1.33 16 24 H 0.08 2.42 7.85 -2.39 -0.02 2.40 16 25 H 0.07 1.76 8.00 -2.39 -0.02 1.74 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.98 6.72 -2.39 -0.02 1.96 16 28 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 30 H 0.35 6.00 8.90 -89.70 -0.80 5.20 16 31 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.96 8.00 -2.39 -0.02 1.94 16 Total: -1.00 -69.62 278.04 -2.48 -72.10 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.27 Total: 5.85 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 4.12 Total: -6.65 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -7.37 Total: -96.81 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -1.53 Total: -21.92 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.62 -2.48 -72.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385228366.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.900 kcal (2) G-P(sol) polarization free energy of solvation -69.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds