Wall clock time and date at job start Mon Mar 30 2020 02:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00132 * 2 1 4 4 H 1.48493 * 109.47424 * 270.00436 * 3 2 1 5 5 H 1.48501 * 109.46734 * 30.00178 * 3 2 1 6 6 H 1.48501 * 109.47331 * 150.00087 * 3 2 1 7 7 C 1.37882 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99923 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99794 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.46895 * 180.02562 * 9 7 2 11 11 C 1.42902 * 113.99765 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46907 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47261 * 65.00110 * 12 11 10 14 14 C 1.48529 * 111.00073 * 52.60606 * 13 12 11 15 15 C 1.54943 * 103.23110 * 159.72217 * 14 13 12 16 16 C 1.54593 * 102.91873 * 322.58517 * 15 14 13 17 17 H 1.09003 * 110.31031 * 140.87338 * 16 15 14 18 18 N 1.46901 * 110.30719 * 263.04117 * 16 15 14 19 19 C 1.47906 * 111.00163 * 169.99916 * 13 12 11 20 20 H 0.97002 * 119.99774 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47165 * 59.99810 * 9 7 2 22 22 H 1.09004 * 109.47060 * 299.99925 * 9 7 2 23 23 H 1.08997 * 109.47400 * 60.00083 * 11 10 9 24 24 H 1.09005 * 109.47307 * 300.00021 * 11 10 9 25 25 H 1.09002 * 109.47127 * 304.99927 * 12 11 10 26 26 H 1.09006 * 109.46990 * 185.00213 * 12 11 10 27 27 H 1.08995 * 110.67216 * 41.28703 * 14 13 12 28 28 H 1.09004 * 110.80922 * 278.21881 * 14 13 12 29 29 H 1.08999 * 110.72722 * 204.22642 * 15 14 13 30 30 H 1.08997 * 110.72276 * 80.93671 * 15 14 13 31 31 H 1.00894 * 110.99648 * 295.71597 * 18 16 15 32 32 H 1.00900 * 111.00239 * 59.67212 * 18 16 15 33 33 H 1.08998 * 109.91583 * 94.80499 * 19 13 12 34 34 H 1.09004 * 109.91554 * 333.51082 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5853 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6481 -5.9561 0.0006 13 7 3.4081 -5.8871 1.2558 14 6 2.5000 -5.9238 2.4306 15 6 3.4318 -6.3696 3.5854 16 6 4.3639 -7.3956 2.9010 17 1 5.3833 -7.2865 3.2710 18 7 3.8783 -8.7619 3.1365 19 6 4.3010 -7.0574 1.3999 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8902 22 1 0.6248 -2.5571 0.8897 23 1 0.9447 -4.9827 -0.8897 24 1 0.9453 -4.9822 0.8903 25 1 3.3217 -5.7960 -0.8412 26 1 2.1821 -6.9375 -0.0885 27 1 1.7022 -6.6505 2.2778 28 1 2.0855 -4.9356 2.6306 29 1 2.8586 -6.8415 4.3834 30 1 4.0037 -5.5242 3.9678 31 1 3.9150 -8.9945 4.1176 32 1 2.9456 -8.8823 2.7709 33 1 5.2974 -6.8117 1.0327 34 1 3.8961 -7.9039 0.8451 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385243917.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:23 Heat of formation + Delta-G solvation = -44.537858 kcal Electronic energy + Delta-G solvation = -14510.448471 eV Core-core repulsion = 12057.059665 eV Total energy + Delta-G solvation = -2453.388805 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.26866 -36.62863 -34.11623 -32.61923 -30.44452 -28.89971 -27.18415 -26.04654 -22.75356 -22.24286 -20.53637 -20.14946 -16.60783 -16.38923 -15.86214 -15.65567 -15.18057 -14.58311 -14.19477 -13.78310 -13.63517 -13.37424 -12.57916 -12.21762 -11.85477 -11.74592 -11.55658 -11.28039 -11.05153 -10.88522 -10.79681 -10.62691 -10.39500 -9.93833 -9.05856 -8.90441 -8.76792 -8.17457 -8.10266 -6.07419 -4.08327 3.33118 3.37824 3.44062 4.04626 4.37477 4.45596 4.62206 4.72657 4.93755 5.05667 5.29146 5.30484 5.41896 5.48887 5.61173 5.74338 5.74962 5.95456 6.01621 6.06659 6.11789 6.18028 6.34125 6.81626 7.12096 7.14400 7.16940 7.27313 7.46299 7.84674 8.20307 8.64668 9.06453 9.56502 11.04299 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.051302 B = 0.005710 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.656446 B = 4902.917236 C = 5073.100522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.063 3.937 12 C 0.053 3.947 13 N -0.501 5.501 14 C 0.036 3.964 15 C -0.159 4.159 16 C 0.079 3.921 17 H 0.089 0.911 18 N -0.842 5.842 19 C 0.039 3.961 20 H 0.263 0.737 21 H 0.002 0.998 22 H 0.002 0.998 23 H 0.039 0.961 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.340 0.660 32 H 0.338 0.662 33 H 0.082 0.918 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 -14.826 5.372 16.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.549 4.549 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.015 4.015 12 C -0.075 4.075 13 N -0.226 5.226 14 C -0.092 4.092 15 C -0.199 4.199 16 C -0.033 4.033 17 H 0.107 0.893 18 N -0.371 5.371 19 C -0.090 4.090 20 H 0.073 0.927 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.100 0.900 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.513 -14.417 4.873 16.186 hybrid contribution -1.321 0.603 0.528 1.545 sum 4.193 -13.814 5.402 15.414 Atomic orbital electron populations 1.69969 1.06119 1.27057 1.50902 1.24950 0.94955 0.99413 0.95234 0.86342 0.79707 0.82271 0.78215 1.20490 1.21145 1.19585 1.21071 0.94125 0.89322 1.50352 0.91477 1.20183 0.88858 0.83945 0.95085 1.87965 1.34633 1.12296 1.95014 1.22307 0.93886 0.86376 0.98978 1.22340 0.96023 0.96025 0.93144 1.64799 1.17686 1.38509 1.01580 1.23208 0.94203 1.01549 0.90216 1.23327 0.98516 1.00500 0.97519 1.22320 0.98971 0.86540 0.95475 0.89266 1.58994 1.30594 1.25139 1.22411 1.22970 0.99071 0.91965 0.94953 0.92745 0.97979 0.98002 0.94246 0.94621 0.89857 0.94309 0.94568 0.89216 0.91539 0.90079 0.84692 0.84961 0.89956 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.51 -15.38 9.43 -34.44 -0.32 -15.70 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.44 5.69 36.00 0.20 5.65 16 10 O -0.38 -9.46 10.27 -35.23 -0.36 -9.82 16 11 C 0.06 1.20 5.76 37.16 0.21 1.41 16 12 C 0.05 0.83 5.41 -3.83 -0.02 0.81 16 13 N -0.50 -7.86 5.34 -230.45 -1.23 -9.09 16 14 C 0.04 0.51 5.08 -1.90 -0.01 0.50 16 15 C -0.16 -1.83 6.76 -24.87 -0.17 -2.00 16 16 C 0.08 0.85 4.13 -66.36 -0.27 0.58 16 17 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 18 N -0.84 -7.71 9.14 -3.51 -0.03 -7.75 16 19 C 0.04 0.49 6.45 -2.75 -0.02 0.47 16 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 22 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.66 6.52 -51.93 -0.34 0.32 16 25 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.04 0.52 7.81 -51.93 -0.41 0.11 16 27 H 0.04 0.47 8.01 -51.93 -0.42 0.05 16 28 H 0.09 1.51 7.56 -51.93 -0.39 1.12 16 29 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.34 2.53 9.08 -39.29 -0.36 2.17 16 32 H 0.34 2.97 8.97 -39.29 -0.35 2.62 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.61 7.34 -51.93 -0.38 0.23 16 LS Contribution 279.54 15.07 4.21 4.21 Total: -1.00 -31.90 279.54 -7.76 -39.66 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.56 Total: -1.05 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.49 Total: -6.75 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.53 Total: -43.44 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.36 Total: -9.82 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.90 -7.76 -39.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385243917.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.881 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds