Wall clock time and date at job start Mon Mar 30 2020 02:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00132 * 2 1 4 4 H 1.48493 * 109.47424 * 270.00436 * 3 2 1 5 5 H 1.48501 * 109.46734 * 30.00178 * 3 2 1 6 6 H 1.48501 * 109.47331 * 150.00087 * 3 2 1 7 7 C 1.37882 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99923 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99794 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.46895 * 180.02562 * 9 7 2 11 11 C 1.42902 * 113.99765 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46907 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47261 * 65.00110 * 12 11 10 14 14 C 1.48529 * 111.00073 * 52.60606 * 13 12 11 15 15 C 1.54943 * 103.23110 * 159.72217 * 14 13 12 16 16 C 1.54593 * 102.91873 * 322.58517 * 15 14 13 17 17 H 1.09003 * 110.31031 * 140.87338 * 16 15 14 18 18 N 1.46901 * 110.30719 * 263.04117 * 16 15 14 19 19 C 1.47906 * 111.00163 * 169.99916 * 13 12 11 20 20 H 0.97002 * 119.99774 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47165 * 59.99810 * 9 7 2 22 22 H 1.09004 * 109.47060 * 299.99925 * 9 7 2 23 23 H 1.08997 * 109.47400 * 60.00083 * 11 10 9 24 24 H 1.09005 * 109.47307 * 300.00021 * 11 10 9 25 25 H 1.09002 * 109.47127 * 304.99927 * 12 11 10 26 26 H 1.09006 * 109.46990 * 185.00213 * 12 11 10 27 27 H 1.08995 * 110.67216 * 41.28703 * 14 13 12 28 28 H 1.09004 * 110.80922 * 278.21881 * 14 13 12 29 29 H 1.08999 * 110.72722 * 204.22642 * 15 14 13 30 30 H 1.08997 * 110.72276 * 80.93671 * 15 14 13 31 31 H 1.00894 * 110.99648 * 295.71597 * 18 16 15 32 32 H 1.00900 * 111.00239 * 59.67212 * 18 16 15 33 33 H 1.08998 * 109.91583 * 94.80499 * 19 13 12 34 34 H 1.09004 * 109.91554 * 333.51082 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5853 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6481 -5.9561 0.0006 13 7 3.4081 -5.8871 1.2558 14 6 2.5000 -5.9238 2.4306 15 6 3.4318 -6.3696 3.5854 16 6 4.3639 -7.3956 2.9010 17 1 5.3833 -7.2865 3.2710 18 7 3.8783 -8.7619 3.1365 19 6 4.3010 -7.0574 1.3999 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8902 22 1 0.6248 -2.5571 0.8897 23 1 0.9447 -4.9827 -0.8897 24 1 0.9453 -4.9822 0.8903 25 1 3.3217 -5.7960 -0.8412 26 1 2.1821 -6.9375 -0.0885 27 1 1.7022 -6.6505 2.2778 28 1 2.0855 -4.9356 2.6306 29 1 2.8586 -6.8415 4.3834 30 1 4.0037 -5.5242 3.9678 31 1 3.9150 -8.9945 4.1176 32 1 2.9456 -8.8823 2.7709 33 1 5.2974 -6.8117 1.0327 34 1 3.8961 -7.9039 0.8451 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385243917.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:22 Heat of formation + Delta-G solvation = -70.271850 kcal Electronic energy + Delta-G solvation = -14511.564380 eV Core-core repulsion = 12057.059665 eV Total energy + Delta-G solvation = -2454.504715 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36894 -38.42295 -35.38201 -34.69410 -31.59510 -30.21051 -29.02747 -27.34988 -24.52022 -23.96907 -21.62165 -21.23853 -18.62623 -17.66994 -17.37084 -17.08038 -16.44106 -16.31367 -15.74556 -15.16396 -14.91819 -14.76466 -14.09400 -13.53231 -13.44301 -13.12140 -12.92565 -12.75289 -12.73441 -12.32239 -12.24514 -12.18459 -11.85692 -11.63719 -11.27972 -10.86800 -10.21739 -9.65830 -9.29956 -8.32845 -6.45002 1.39311 1.42367 1.54678 2.34681 2.95549 3.00843 3.20411 3.58831 3.66916 3.82498 4.06502 4.21803 4.22963 4.32935 4.41162 4.52962 4.58232 4.71704 4.80113 4.83266 4.93723 4.98883 5.09657 5.16423 5.20637 5.54566 5.87933 5.95696 6.07019 6.24824 6.54703 6.56584 6.83737 7.27269 8.79621 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.051302 B = 0.005710 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.656446 B = 4902.917236 C = 5073.100522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.396 6.396 11 C 0.054 3.946 12 C 0.061 3.939 13 N -0.531 5.531 14 C 0.035 3.965 15 C -0.151 4.151 16 C 0.089 3.911 17 H 0.095 0.905 18 N -0.840 5.840 19 C 0.040 3.960 20 H 0.271 0.729 21 H -0.016 1.016 22 H -0.018 1.018 23 H 0.048 0.952 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.353 0.647 32 H 0.342 0.658 33 H 0.079 0.921 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 -15.406 5.802 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.315 6.315 11 C -0.024 4.024 12 C -0.067 4.067 13 N -0.257 5.257 14 C -0.093 4.093 15 C -0.191 4.191 16 C -0.023 4.023 17 H 0.113 0.887 18 N -0.370 5.370 19 C -0.088 4.088 20 H 0.080 0.920 21 H 0.002 0.998 22 H 0.000 1.000 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.098 0.902 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.318 -15.033 5.311 17.150 hybrid contribution -1.617 0.694 0.395 1.803 sum 4.701 -14.340 5.705 16.133 Atomic orbital electron populations 1.70071 1.07754 1.28641 1.50601 1.25960 0.95960 1.03357 0.93850 0.85181 0.78341 0.76972 0.78903 1.19173 1.19763 1.19004 1.21375 0.94016 0.90908 1.52167 0.92259 1.19796 0.88652 0.84987 0.93149 1.87917 1.34729 1.13846 1.95056 1.22648 0.95513 0.84684 0.99512 1.22258 0.95104 0.95945 0.93392 1.64719 1.18504 1.40724 1.01721 1.23145 0.95060 1.00060 0.91018 1.23301 0.98189 1.00488 0.97112 1.22185 0.99133 0.87059 0.93966 0.88666 1.58957 1.30912 1.23666 1.23508 1.22981 0.98187 0.91082 0.96503 0.92030 0.99802 1.00023 0.93402 0.94269 0.90342 0.90983 0.93034 0.92835 0.89358 0.91306 0.83313 0.84503 0.90247 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.98 45.33 29.54 68.60 2.03 47.36 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.55 -33.70 9.43 25.60 0.24 -33.46 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.21 12.21 5.69 71.23 0.41 12.61 16 10 O -0.40 -20.31 10.27 -148.98 -1.53 -21.84 16 11 C 0.05 2.07 5.76 71.98 0.41 2.49 16 12 C 0.06 1.87 5.41 86.30 0.47 2.33 16 13 N -0.53 -16.30 5.34 -883.00 -4.72 -21.02 16 14 C 0.03 0.98 5.08 86.65 0.44 1.42 16 15 C -0.15 -3.26 6.76 31.80 0.22 -3.05 16 16 C 0.09 1.73 4.13 45.79 0.19 1.92 16 17 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 18 N -0.84 -12.97 9.14 -165.03 -1.51 -14.48 16 19 C 0.04 0.95 6.45 86.45 0.56 1.51 16 20 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 21 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 22 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 23 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 1.48 6.52 -2.38 -0.02 1.46 16 25 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.07 1.74 7.81 -2.38 -0.02 1.72 16 27 H 0.05 1.26 8.01 -2.39 -0.02 1.24 16 28 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 29 H 0.09 1.51 8.05 -2.39 -0.02 1.50 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.35 4.16 9.08 -89.70 -0.81 3.34 16 32 H 0.34 4.98 8.97 -89.69 -0.80 4.18 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.29 7.34 -2.38 -0.02 1.27 16 Total: -1.00 -68.81 279.54 -2.59 -71.40 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -0.54 Total: 8.60 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 3.39 Total: -13.35 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -5.94 Total: -92.17 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.53 Total: -21.84 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -68.81 -2.59 -71.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385243917.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.132 kcal (2) G-P(sol) polarization free energy of solvation -68.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds