Wall clock time and date at job start Mon Mar 30 2020 03:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99897 * 2 1 4 4 H 1.48503 * 109.46806 * 269.99591 * 3 2 1 5 5 H 1.48494 * 109.47267 * 29.99663 * 3 2 1 6 6 H 1.48498 * 109.47432 * 149.99975 * 3 2 1 7 7 C 1.37879 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99678 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47045 * 179.97438 * 9 7 2 11 11 S 1.81406 * 109.47185 * 179.97438 * 10 9 7 12 12 O 1.42103 * 109.46451 * 70.94617 * 11 10 9 13 13 C 1.76195 * 102.99876 * 179.97438 * 11 10 9 14 14 N 1.33239 * 125.52919 * 269.95875 * 13 11 10 15 15 C 1.30829 * 109.82920 * 180.02562 * 14 13 11 16 16 N 1.34428 * 108.07758 * 0.02562 * 15 14 13 17 17 H 0.97003 * 126.82574 * 179.97438 * 16 15 14 18 18 N 1.30714 * 125.52135 * 90.00416 * 13 11 10 19 19 H 0.96998 * 120.00147 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.47287 * 59.99656 * 9 7 2 21 21 H 1.08998 * 109.47182 * 299.99644 * 9 7 2 22 22 H 1.09005 * 109.46920 * 59.99968 * 10 9 7 23 23 H 1.08998 * 109.47278 * 300.00122 * 10 9 7 24 24 H 1.08003 * 125.96325 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.7223 -5.4248 -1.2648 13 6 2.6270 -6.4347 0.0004 14 7 3.1919 -6.9634 -1.0843 15 6 4.1132 -7.8225 -0.7308 16 7 4.1549 -7.8604 0.6123 17 1 4.7400 -8.4063 1.1606 18 7 3.1831 -6.9526 1.0640 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5570 -0.8897 21 1 0.6241 -2.5567 0.8903 22 1 2.8720 -3.6043 0.8906 23 1 2.8720 -3.6043 -0.8894 24 1 4.7316 -8.4010 -1.4012 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388421218.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:54 Heat of formation + Delta-G solvation = 39.069967 kcal Electronic energy + Delta-G solvation = -11767.841969 eV Core-core repulsion = 9423.739443 eV Total energy + Delta-G solvation = -2344.102527 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.047 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.01915 -35.26291 -33.65710 -32.58321 -31.25935 -30.85054 -25.31121 -23.43093 -22.29706 -21.00977 -18.67717 -17.08482 -16.52831 -15.60131 -15.32587 -14.81784 -14.47146 -13.90935 -13.70020 -12.36835 -12.29699 -11.93099 -11.35217 -10.96498 -10.75382 -10.40703 -10.34094 -10.10453 -10.09632 -9.94469 -9.54317 -9.23362 -8.39282 -7.94012 -6.02530 -4.06082 1.33174 1.94224 2.54038 2.80835 3.27802 3.32301 3.38417 3.41548 4.14571 4.45273 4.53850 4.94453 5.32780 5.75754 6.02751 6.18753 6.19896 6.82349 6.88144 7.49672 7.60578 7.88446 7.92736 8.34178 8.97925 9.57784 11.08204 Molecular weight = 215.05amu Principal moments of inertia in cm(-1) A = 0.057517 B = 0.006675 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.698230 B = 4193.693654 C = 4451.624227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.420 4.420 11 S 1.367 4.633 12 O -0.826 6.826 13 C -0.097 4.097 14 N -0.501 5.501 15 C 0.245 3.755 16 N -0.484 5.484 17 H 0.440 0.560 18 N -0.252 5.252 19 H 0.263 0.737 20 H 0.024 0.976 21 H 0.031 0.969 22 H 0.106 0.894 23 H 0.080 0.920 24 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.311 -14.771 4.700 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.561 4.561 11 S 1.557 4.443 12 O -0.820 6.820 13 C -0.469 4.469 14 N -0.228 5.228 15 C -0.055 4.055 16 N -0.204 5.204 17 H 0.286 0.714 18 N -0.083 5.083 19 H 0.072 0.928 20 H 0.043 0.957 21 H 0.050 0.950 22 H 0.125 0.875 23 H 0.099 0.901 24 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.888 -14.635 5.021 16.555 hybrid contribution 2.657 0.500 -1.562 3.123 sum 8.546 -14.135 3.459 16.876 Atomic orbital electron populations 1.69951 1.06007 1.26886 1.50344 1.25037 0.94935 0.99321 0.95178 0.86527 0.79759 0.83184 0.78142 1.20672 1.21060 1.19864 1.21119 0.93058 0.90266 1.51156 0.92452 1.18825 0.92974 0.90102 0.98209 1.27686 1.10144 1.11605 1.06677 1.70177 0.82179 0.83412 1.08563 1.93077 1.62191 1.81857 1.44878 1.35508 1.11855 1.11439 0.88050 1.70826 1.09744 1.11537 1.30661 1.26300 0.97346 0.97434 0.84439 1.48364 1.30647 1.34111 1.07244 0.71441 1.77888 1.02809 1.05215 1.22344 0.92766 0.95720 0.95043 0.87524 0.90136 0.76136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 14 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 14 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.65 14 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 14 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 14 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 14 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 14 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 14 9 C 0.04 0.97 4.98 -27.89 -0.14 0.83 14 10 C -0.42 -8.70 5.82 37.16 0.22 -8.48 14 11 S 1.37 24.13 13.86 -107.50 -1.49 22.64 14 12 O -0.83 -19.31 17.82 -35.23 -0.63 -19.94 14 13 C -0.10 -1.64 7.81 -91.81 -0.72 -2.36 14 14 N -0.50 -8.67 11.12 -15.02 -0.17 -8.84 14 15 C 0.25 2.77 13.13 -90.66 -1.19 1.58 14 16 N -0.48 -4.97 7.45 29.53 0.22 -4.75 14 17 H 0.44 2.42 8.96 -182.33 -1.63 0.78 14 18 N -0.25 -3.63 12.80 29.95 0.38 -3.24 14 19 H 0.26 7.37 8.31 -40.82 -0.34 7.03 14 20 H 0.02 0.70 8.14 -51.93 -0.42 0.27 14 21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 14 22 H 0.11 1.97 8.14 -51.92 -0.42 1.54 14 23 H 0.08 1.79 8.14 -51.93 -0.42 1.37 14 24 H 0.22 1.25 8.06 -52.48 -0.42 0.82 14 LS Contribution 239.14 15.07 3.60 3.60 Total: -1.00 -39.18 239.14 -7.89 -47.07 By element: Atomic # 1 Polarization: -2.12 SS G_CDS: -3.29 Total: -5.41 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -2.24 Total: -21.85 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 1.17 Total: -42.77 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.63 Total: -19.94 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 24.13 SS G_CDS: -1.49 Total: 22.64 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -39.18 -7.89 -47.07 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388421218.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.142 kcal (2) G-P(sol) polarization free energy of solvation -39.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds