Wall clock time and date at job start Mon Mar 30 2020 03:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30912 * 1 3 3 Si 1.86806 * 119.99745 * 2 1 4 4 H 1.48507 * 109.47076 * 240.00090 * 3 2 1 5 5 H 1.48496 * 109.47003 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47303 * 120.00079 * 3 2 1 7 7 C 1.39853 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99699 * 196.16974 * 7 2 1 9 9 C 1.41080 * 119.99954 * 16.44511 * 7 2 1 10 10 C 1.40903 * 120.15886 * 26.01248 * 9 7 2 11 11 C 1.36349 * 119.88489 * 179.97438 * 10 9 7 12 12 C 1.39555 * 120.20370 * 359.97438 * 11 10 9 13 13 N 1.38984 * 119.83810 * 180.02562 * 12 11 10 14 14 C 1.39669 * 120.32374 * 0.03735 * 12 11 10 15 15 F 1.35100 * 119.94166 * 179.97438 * 14 12 11 16 16 C 1.36637 * 120.11580 * 359.67525 * 14 12 11 17 17 Cl 1.73600 * 120.10899 * 180.31737 * 16 14 12 18 18 H 0.96993 * 120.00498 * 4.98366 * 1 2 3 19 19 H 1.08002 * 120.05891 * 359.97438 * 10 9 7 20 20 H 1.07994 * 119.89636 * 179.97438 * 11 10 9 21 21 H 0.97001 * 119.99935 * 359.97438 * 13 12 11 22 22 H 0.97002 * 120.00318 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.0968 1.6965 -1.2126 5 1 1.2780 2.7465 0.0006 6 1 3.0969 1.6966 1.2125 7 6 2.0085 -1.2111 -0.0005 8 1 3.0565 -1.2296 0.2599 9 6 1.3464 -2.4078 -0.3470 10 6 0.2164 -2.3737 -1.1879 11 6 -0.4189 -3.5337 -1.5196 12 6 0.0470 -4.7543 -1.0291 13 7 -0.6060 -5.9322 -1.3725 14 6 1.1662 -4.7981 -0.1947 15 9 1.6104 -5.9839 0.2761 16 6 1.8164 -3.6442 0.1413 17 17 3.2124 -3.6996 1.1717 18 1 -0.4850 0.8368 -0.0730 19 1 -0.1460 -1.4304 -1.5692 20 1 -1.2853 -3.5078 -2.1638 21 1 -1.3838 -5.9045 -1.9514 22 1 -0.2840 -6.7820 -1.0332 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715412.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:37 Heat of formation + Delta-G solvation = -41.447190 kcal Electronic energy + Delta-G solvation = -12022.772325 eV Core-core repulsion = 9517.381549 eV Total energy + Delta-G solvation = -2505.390775 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.75028 -37.80484 -35.23757 -34.36658 -32.43474 -29.15128 -28.45513 -24.60786 -21.44213 -20.94255 -17.69557 -16.50663 -16.01229 -15.23290 -15.07024 -14.58553 -14.07714 -13.29024 -13.10389 -12.39757 -12.00637 -11.60602 -11.20169 -11.04066 -10.91791 -10.73204 -10.44796 -9.89842 -9.46992 -9.42494 -8.82805 -7.46621 -6.90357 -6.65362 -4.30345 2.52899 2.68492 3.06167 3.09588 3.16298 3.56382 3.91755 4.47345 4.85127 5.39160 5.48371 6.18822 6.46111 6.69353 6.98679 7.09420 7.33757 7.41235 7.78685 7.91011 8.30427 8.47786 8.58973 8.71825 8.77219 10.12010 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.036796 B = 0.011968 C = 0.009249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.763083 B = 2338.938853 C = 3026.520091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.445 4.445 8 H 0.086 0.914 9 C 0.103 3.897 10 C -0.116 4.116 11 C -0.142 4.142 12 C 0.073 3.927 13 N -0.890 5.890 14 C 0.055 3.945 15 F -0.159 7.159 16 C -0.143 4.143 17 Cl -0.100 7.100 18 H 0.283 0.717 19 H 0.132 0.868 20 H 0.104 0.896 21 H 0.388 0.612 22 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 -2.764 -2.155 3.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.474 4.474 8 H 0.104 0.896 9 C 0.099 3.901 10 C -0.136 4.136 11 C -0.164 4.164 12 C -0.027 4.027 13 N -0.434 5.434 14 C 0.031 3.969 15 F -0.138 7.138 16 C -0.172 4.172 17 Cl -0.071 7.071 18 H 0.094 0.906 19 H 0.149 0.851 20 H 0.122 0.878 21 H 0.215 0.785 22 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.495 -2.540 -1.938 3.233 hybrid contribution 0.273 0.225 0.115 0.372 sum -0.222 -2.315 -1.823 2.955 Atomic orbital electron populations 1.69819 1.07487 1.29860 1.35052 1.25867 0.94735 1.01332 0.92175 0.86336 0.80133 0.80024 0.80168 1.18756 1.20350 1.18832 1.19463 0.97893 0.90532 1.39529 0.89556 1.17170 0.92049 0.90276 0.90591 1.20952 0.97270 0.96994 0.98411 1.20038 1.01431 0.91006 1.03933 1.17083 0.95347 0.87709 1.02576 1.41629 1.35974 1.05550 1.60275 1.16341 0.97543 0.79621 1.03439 1.91308 1.89254 1.45490 1.87744 1.20291 0.96363 0.94043 1.06492 1.98210 1.42472 1.98732 1.67707 0.90630 0.85078 0.87842 0.78535 0.78703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.64 10.96 55.54 0.61 -19.03 14 2 C 0.08 1.85 5.15 -17.34 -0.09 1.76 14 3 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 14 4 H -0.26 -5.23 7.11 56.52 0.40 -4.82 14 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 14 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 14 7 C -0.44 -11.43 8.49 -37.90 -0.32 -11.76 14 8 H 0.09 2.19 7.12 -52.48 -0.37 1.82 14 9 C 0.10 2.67 5.56 -106.77 -0.59 2.08 14 10 C -0.12 -2.82 8.62 -39.25 -0.34 -3.16 14 11 C -0.14 -3.09 9.82 -39.77 -0.39 -3.48 14 12 C 0.07 1.58 6.77 -83.59 -0.57 1.02 14 13 N -0.89 -15.22 9.05 32.55 0.29 -14.92 14 14 C 0.05 1.29 7.24 -39.63 -0.29 1.00 14 15 F -0.16 -3.56 16.14 2.25 0.04 -3.53 14 16 C -0.14 -3.56 6.34 -39.12 -0.25 -3.81 14 17 Cl -0.10 -2.29 27.21 -51.86 -1.41 -3.70 14 18 H 0.28 6.35 8.30 -40.82 -0.34 6.01 14 19 H 0.13 3.21 6.21 -52.49 -0.33 2.89 14 20 H 0.10 1.94 8.06 -52.49 -0.42 1.52 14 21 H 0.39 5.53 8.83 -40.82 -0.36 5.17 14 22 H 0.39 6.14 8.28 -40.82 -0.34 5.80 14 LS Contribution 219.08 15.07 3.30 3.30 Total: -1.00 -26.57 219.08 -5.99 -32.56 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -0.95 Total: 8.44 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -2.84 Total: -16.35 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.90 Total: -33.95 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.04 Total: -3.53 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -1.41 Total: -3.70 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -26.57 -5.99 -32.56 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715412.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.891 kcal (2) G-P(sol) polarization free energy of solvation -26.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds