Wall clock time and date at job start Mon Mar 30 2020 03:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30912 * 1 3 3 Si 1.86806 * 119.99745 * 2 1 4 4 H 1.48507 * 109.47076 * 240.00090 * 3 2 1 5 5 H 1.48496 * 109.47003 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47303 * 120.00079 * 3 2 1 7 7 C 1.39853 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99699 * 196.16974 * 7 2 1 9 9 C 1.41080 * 119.99954 * 16.44511 * 7 2 1 10 10 C 1.40903 * 120.15886 * 26.01248 * 9 7 2 11 11 C 1.36349 * 119.88489 * 179.97438 * 10 9 7 12 12 C 1.39555 * 120.20370 * 359.97438 * 11 10 9 13 13 N 1.38984 * 119.83810 * 180.02562 * 12 11 10 14 14 C 1.39669 * 120.32374 * 0.03735 * 12 11 10 15 15 F 1.35100 * 119.94166 * 179.97438 * 14 12 11 16 16 C 1.36637 * 120.11580 * 359.67525 * 14 12 11 17 17 Cl 1.73600 * 120.10899 * 180.31737 * 16 14 12 18 18 H 0.96993 * 120.00498 * 4.98366 * 1 2 3 19 19 H 1.08002 * 120.05891 * 359.97438 * 10 9 7 20 20 H 1.07994 * 119.89636 * 179.97438 * 11 10 9 21 21 H 0.97001 * 119.99935 * 359.97438 * 13 12 11 22 22 H 0.97002 * 120.00318 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.0968 1.6965 -1.2126 5 1 1.2780 2.7465 0.0006 6 1 3.0969 1.6966 1.2125 7 6 2.0085 -1.2111 -0.0005 8 1 3.0565 -1.2296 0.2599 9 6 1.3464 -2.4078 -0.3470 10 6 0.2164 -2.3737 -1.1879 11 6 -0.4189 -3.5337 -1.5196 12 6 0.0470 -4.7543 -1.0291 13 7 -0.6060 -5.9322 -1.3725 14 6 1.1662 -4.7981 -0.1947 15 9 1.6104 -5.9839 0.2761 16 6 1.8164 -3.6442 0.1413 17 17 3.2124 -3.6996 1.1717 18 1 -0.4850 0.8368 -0.0730 19 1 -0.1460 -1.4304 -1.5692 20 1 -1.2853 -3.5078 -2.1638 21 1 -1.3838 -5.9045 -1.9514 22 1 -0.2840 -6.7820 -1.0332 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715412.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:37 Heat of formation + Delta-G solvation = -57.207691 kcal Electronic energy + Delta-G solvation = -12023.455751 eV Core-core repulsion = 9517.381549 eV Total energy + Delta-G solvation = -2506.074202 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.53258 -39.58337 -37.04144 -36.12011 -34.14817 -30.94215 -30.23628 -26.39694 -23.24190 -22.72590 -19.51986 -18.18003 -17.69004 -17.04651 -16.76523 -16.37685 -15.73437 -14.98824 -14.84041 -14.18823 -13.79704 -13.35878 -12.85829 -12.73305 -12.66345 -12.53480 -12.08615 -11.69461 -11.27076 -11.20515 -10.57353 -9.28753 -8.69037 -8.37262 -6.15733 0.68903 0.91381 1.44038 1.52571 1.56336 1.72766 2.26061 2.67514 3.36255 3.54116 3.69654 4.46570 4.69047 4.92148 5.21194 5.29062 5.53136 5.64601 5.94832 6.11553 6.49375 6.73921 6.89697 6.96790 7.25837 8.35648 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.036796 B = 0.011968 C = 0.009249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.763083 B = 2338.938853 C = 3026.520091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.042 3.958 3 Si 0.974 3.026 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.477 4.477 8 H 0.078 0.922 9 C 0.074 3.926 10 C -0.127 4.127 11 C -0.141 4.141 12 C 0.091 3.909 13 N -0.872 5.872 14 C 0.032 3.968 15 F -0.155 7.155 16 C -0.162 4.162 17 Cl -0.094 7.094 18 H 0.291 0.709 19 H 0.124 0.876 20 H 0.137 0.863 21 H 0.406 0.594 22 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.132 -2.921 -2.763 4.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.173 4.173 3 Si 0.796 3.204 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.507 4.507 8 H 0.096 0.904 9 C 0.069 3.931 10 C -0.148 4.148 11 C -0.163 4.163 12 C -0.012 4.012 13 N -0.418 5.418 14 C 0.007 3.993 15 F -0.134 7.134 16 C -0.192 4.192 17 Cl -0.066 7.066 18 H 0.102 0.898 19 H 0.142 0.858 20 H 0.155 0.845 21 H 0.235 0.765 22 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.179 -2.743 -2.562 3.934 hybrid contribution 0.415 0.123 0.285 0.518 sum -0.764 -2.621 -2.277 3.555 Atomic orbital electron populations 1.69837 1.08531 1.31113 1.35467 1.26566 0.95458 1.03927 0.91351 0.85354 0.78919 0.76233 0.79915 1.18395 1.19028 1.19079 1.19592 0.97791 0.91714 1.41580 0.90424 1.17480 0.93164 0.90787 0.91636 1.20996 0.97387 0.97739 0.98632 1.20323 1.02001 0.90167 1.03826 1.17213 0.94252 0.89102 1.00639 1.41581 1.35908 1.04524 1.59747 1.16511 0.98555 0.79524 1.04686 1.91307 1.89332 1.44984 1.87799 1.20531 0.97040 0.94538 1.07052 1.98193 1.42128 1.98726 1.67506 0.89840 0.85804 0.84481 0.76450 0.77633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.58 10.96 21.81 0.24 -40.34 14 2 C 0.04 2.03 5.15 85.22 0.44 2.47 14 3 Si 0.97 37.25 29.59 68.60 2.03 39.28 14 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 14 5 H -0.27 -9.53 7.11 99.48 0.71 -8.82 14 6 H -0.27 -10.18 7.11 99.48 0.71 -9.48 14 7 C -0.48 -24.93 8.49 23.36 0.20 -24.73 14 8 H 0.08 4.04 7.12 -2.91 -0.02 4.02 14 9 C 0.07 3.83 5.56 -21.25 -0.12 3.71 14 10 C -0.13 -6.15 8.62 22.48 0.19 -5.96 14 11 C -0.14 -5.86 9.82 22.15 0.22 -5.64 14 12 C 0.09 3.71 6.77 38.67 0.26 3.97 14 13 N -0.87 -26.90 9.05 -50.93 -0.46 -27.36 14 14 C 0.03 1.47 7.24 22.24 0.16 1.63 14 15 F -0.16 -6.76 16.14 44.97 0.73 -6.03 14 16 C -0.16 -8.12 6.34 22.57 0.14 -7.98 14 17 Cl -0.09 -4.34 27.21 -2.72 -0.07 -4.42 14 18 H 0.29 12.94 8.30 -92.71 -0.77 12.17 14 19 H 0.12 6.08 6.21 -2.91 -0.02 6.07 14 20 H 0.14 4.68 8.06 -2.91 -0.02 4.66 14 21 H 0.41 9.92 8.83 -92.71 -0.82 9.10 14 22 H 0.40 11.28 8.28 -92.71 -0.77 10.51 14 Total: -1.00 -55.79 219.08 3.66 -52.13 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -0.30 Total: 19.25 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 1.50 Total: -32.51 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -0.22 Total: -67.70 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 0.73 Total: -6.03 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Atomic # 17 Polarization: -4.34 SS G_CDS: -0.07 Total: -4.42 kcal Total: -55.79 3.66 -52.13 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715412.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.079 kcal (2) G-P(sol) polarization free energy of solvation -55.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds