Wall clock time and date at job start Mon Mar 30 2020 03:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86801 * 119.99486 * 2 1 4 4 H 1.48499 * 109.47140 * 239.99574 * 3 2 1 5 5 H 1.48500 * 109.47424 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47001 * 120.00029 * 3 2 1 7 7 C 1.39844 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00343 * 197.98781 * 7 2 1 9 9 C 1.41124 * 119.99934 * 17.98392 * 7 2 1 10 10 C 1.40904 * 120.14333 * 204.65492 * 9 7 2 11 11 C 1.36476 * 119.83668 * 179.97438 * 10 9 7 12 12 F 1.35103 * 119.93589 * 180.02562 * 11 10 9 13 13 C 1.39780 * 120.13529 * 359.97438 * 11 10 9 14 14 N 1.38992 * 119.85937 * 179.97438 * 13 11 10 15 15 C 1.39586 * 120.28397 * 0.27727 * 13 11 10 16 16 Cl 1.73598 * 119.91936 * 179.70208 * 15 13 11 17 17 C 1.36482 * 120.16283 * 359.44159 * 15 13 11 18 18 H 0.97000 * 120.00128 * 359.97438 * 1 2 3 19 19 H 1.07999 * 120.07770 * 0.02562 * 10 9 7 20 20 H 0.97000 * 119.99962 * 0.02562 * 14 13 11 21 21 H 0.96999 * 120.00229 * 180.02562 * 14 13 11 22 22 H 1.07995 * 120.06727 * 180.27685 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6965 -1.2124 5 1 1.2779 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0084 -1.2110 -0.0005 8 1 3.0489 -1.2340 0.2883 9 6 1.3546 -2.4032 -0.3784 10 6 1.8265 -3.6469 0.0862 11 6 1.1891 -4.7959 -0.2827 12 9 1.6396 -5.9894 0.1621 13 6 0.0705 -4.7404 -1.1190 14 7 -0.5740 -5.9141 -1.4915 15 6 -0.3985 -3.5116 -1.5866 16 17 -1.7839 -3.4542 -2.6310 17 6 0.2264 -2.3548 -1.2205 18 1 -0.4850 0.8400 0.0004 19 1 2.6900 -3.6907 0.7334 20 1 -0.2474 -6.7694 -1.1710 21 1 -1.3502 -5.8780 -2.0721 22 1 -0.1404 -1.4046 -1.5797 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715479.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:48 Heat of formation + Delta-G solvation = -59.213451 kcal Electronic energy + Delta-G solvation = -11946.387300 eV Core-core repulsion = 9440.226122 eV Total energy + Delta-G solvation = -2506.161178 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.59206 -39.69738 -37.22609 -36.13845 -34.32357 -30.99468 -30.21682 -26.47573 -23.38179 -22.71594 -19.58481 -18.30447 -17.69639 -17.07863 -16.77129 -16.36856 -15.70304 -15.31562 -14.74890 -14.29934 -14.08733 -13.48234 -12.83963 -12.74854 -12.64385 -12.20092 -12.03842 -11.91843 -11.54878 -11.40813 -10.68104 -9.35433 -8.68086 -8.42355 -6.19298 0.65586 0.85715 1.38047 1.44599 1.53195 1.56874 2.24820 2.61916 3.22322 3.51609 3.76082 4.32743 4.69986 4.90932 5.21037 5.27603 5.40112 5.54962 5.92762 6.09344 6.46799 6.68047 6.89744 6.91286 7.14262 8.34722 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.033997 B = 0.011120 C = 0.008587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.404581 B = 2517.279533 C = 3260.103849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.488 4.488 8 H 0.083 0.917 9 C 0.075 3.925 10 C -0.230 4.230 11 C 0.049 3.951 12 F -0.154 7.154 13 C 0.081 3.919 14 N -0.873 5.873 15 C -0.058 4.058 16 Cl -0.082 7.082 17 C -0.138 4.138 18 H 0.290 0.710 19 H 0.117 0.883 20 H 0.400 0.600 21 H 0.400 0.600 22 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 -2.949 -2.691 4.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.518 4.518 8 H 0.101 0.899 9 C 0.071 3.929 10 C -0.251 4.251 11 C 0.025 3.975 12 F -0.133 7.133 13 C -0.023 4.023 14 N -0.419 5.419 15 C -0.088 4.088 16 Cl -0.053 7.053 17 C -0.159 4.159 18 H 0.101 0.899 19 H 0.135 0.865 20 H 0.228 0.772 21 H 0.230 0.770 22 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.255 -2.778 -2.734 4.095 hybrid contribution 0.011 0.142 0.036 0.147 sum -1.244 -2.636 -2.699 3.972 Atomic orbital electron populations 1.69864 1.08881 1.30871 1.35349 1.26687 0.95447 1.04372 0.91248 0.85248 0.78753 0.75689 0.80058 1.18479 1.19426 1.18429 1.19611 0.98619 0.91826 1.41746 0.89902 1.17430 0.92101 0.92452 0.90915 1.20786 1.05190 0.91489 1.07610 1.16548 0.97330 0.80557 1.03065 1.91323 1.88878 1.44584 1.88527 1.16893 0.95849 0.87368 1.02142 1.41645 1.36209 1.04412 1.59630 1.19822 0.93835 0.93222 1.01970 1.98241 1.42474 1.98542 1.66052 1.20912 0.98808 0.96106 1.00069 0.89911 0.86486 0.77165 0.77041 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.34 10.96 21.81 0.24 -41.11 14 2 C 0.04 1.82 5.13 85.22 0.44 2.26 14 3 Si 0.98 36.63 29.60 68.60 2.03 38.66 14 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 14 5 H -0.27 -9.60 7.11 99.48 0.71 -8.89 14 6 H -0.26 -9.42 7.11 99.48 0.71 -8.71 14 7 C -0.49 -25.08 9.03 23.37 0.21 -24.87 14 8 H 0.08 4.06 7.91 -2.91 -0.02 4.04 14 9 C 0.07 3.89 5.57 -21.27 -0.12 3.78 14 10 C -0.23 -11.12 9.71 22.51 0.22 -10.90 14 11 C 0.05 2.20 7.26 22.23 0.16 2.36 14 12 F -0.15 -6.35 16.61 44.97 0.75 -5.60 14 13 C 0.08 3.45 6.78 38.71 0.26 3.71 14 14 N -0.87 -29.60 9.01 -50.84 -0.46 -30.06 14 15 C -0.06 -2.60 6.30 22.18 0.14 -2.46 14 16 Cl -0.08 -3.06 27.55 -2.72 -0.07 -3.13 14 17 C -0.14 -6.97 8.40 22.50 0.19 -6.78 14 18 H 0.29 13.23 8.30 -92.71 -0.77 12.46 14 19 H 0.12 5.35 8.06 -2.91 -0.02 5.33 14 20 H 0.40 11.96 8.29 -92.71 -0.77 11.19 14 21 H 0.40 12.16 7.46 -92.71 -0.69 11.47 14 22 H 0.12 6.46 6.16 -2.91 -0.02 6.44 14 Total: -1.00 -53.46 219.38 3.81 -49.65 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.17 Total: 24.50 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 1.50 Total: -32.90 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -0.22 Total: -71.16 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.75 Total: -5.60 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Atomic # 17 Polarization: -3.06 SS G_CDS: -0.07 Total: -3.13 kcal Total: -53.46 3.81 -49.65 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715479.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.567 kcal (2) G-P(sol) polarization free energy of solvation -53.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds