Wall clock time and date at job start Mon Mar 30 2020 03:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86800 * 120.00379 * 2 1 4 4 H 1.48496 * 109.46943 * 89.99830 * 3 2 1 5 5 H 1.48500 * 109.47353 * 210.00643 * 3 2 1 6 6 H 1.48512 * 109.46881 * 330.00295 * 3 2 1 7 7 C 1.39920 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00207 * 17.86969 * 7 2 1 9 9 C 1.41322 * 120.00226 * 197.87387 * 7 2 1 10 10 C 1.40804 * 120.22125 * 28.55050 * 9 7 2 11 11 C 1.37646 * 119.89612 * 179.76422 * 10 9 7 12 12 Cl 1.73599 * 119.82222 * 180.25702 * 11 10 9 13 13 C 1.38780 * 120.36098 * 0.52219 * 11 10 9 14 14 C 1.39032 * 120.45151 * 359.73801 * 13 11 10 15 15 N 1.39884 * 119.95393 * 180.02562 * 14 13 11 16 16 C 1.38640 * 120.09197 * 359.97438 * 14 13 11 17 17 F 1.35103 * 120.17915 * 180.02562 * 16 14 13 18 18 H 0.96994 * 120.00335 * 175.44748 * 1 2 3 19 19 H 1.07997 * 120.05142 * 0.02707 * 10 9 7 20 20 H 1.08001 * 119.77226 * 179.75697 * 13 11 10 21 21 H 0.96999 * 120.00245 * 179.97438 * 15 14 13 22 22 H 0.97004 * 119.99888 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4901 2.0463 1.4001 5 1 3.5401 1.4401 -0.7002 6 1 1.4400 2.6527 -0.7000 7 6 2.0081 -1.2117 -0.0005 8 1 1.5072 -2.1244 -0.2879 9 6 3.3702 -1.2415 0.3751 10 6 3.8764 -0.2902 1.2813 11 6 5.2030 -0.3283 1.6463 12 17 5.8236 0.8414 2.7689 13 6 6.0486 -1.2935 1.1175 14 6 5.5656 -2.2366 0.2174 15 7 6.4269 -3.2051 -0.3087 16 6 4.2313 -2.2192 -0.1586 17 9 3.7600 -3.1351 -1.0328 18 1 -0.4850 -0.8373 -0.0667 19 1 3.2238 0.4657 1.6927 20 1 7.0887 -1.3122 1.4075 21 1 6.0906 -3.8637 -0.9365 22 1 7.3605 -3.2182 -0.0458 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715618.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:53 Heat of formation + Delta-G solvation = -67.800414 kcal Electronic energy + Delta-G solvation = -12088.139701 eV Core-core repulsion = 9581.606164 eV Total energy + Delta-G solvation = -2506.533537 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.26704 -39.74948 -37.33591 -36.41445 -34.66584 -31.68892 -29.38328 -26.98056 -23.27246 -22.64914 -20.28852 -18.49438 -17.97701 -17.43447 -16.31675 -16.08750 -16.03698 -15.39097 -15.00083 -14.38316 -14.08164 -13.97810 -13.09873 -12.80264 -12.62517 -12.37819 -12.03433 -11.66499 -11.51843 -11.25754 -10.72058 -9.67049 -9.32514 -8.38436 -6.74326 0.44197 0.72535 1.27321 1.37658 1.52338 1.75780 2.13984 2.47117 3.03859 3.22756 3.79068 4.38192 4.46572 4.68520 4.90986 5.36299 5.37899 5.48743 5.54929 5.62367 6.16019 6.22844 6.60842 6.66560 7.04908 7.88063 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.016882 C = 0.010498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.702483 B = 1658.178979 C = 2666.450945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.018 3.982 3 Si 1.094 2.906 4 H -0.250 1.250 5 H -0.259 1.259 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.050 0.950 9 C 0.095 3.905 10 C -0.272 4.272 11 C 0.049 3.951 12 Cl -0.076 7.076 13 C -0.269 4.269 14 C 0.240 3.760 15 N -0.862 5.862 16 C -0.122 4.122 17 F -0.166 7.166 18 H 0.281 0.719 19 H 0.119 0.881 20 H 0.150 0.850 21 H 0.402 0.598 22 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.294 0.166 1.785 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.197 4.197 3 Si 0.914 3.086 4 H -0.175 1.175 5 H -0.183 1.183 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.068 0.932 9 C 0.091 3.909 10 C -0.293 4.293 11 C 0.022 3.978 12 Cl -0.047 7.047 13 C -0.293 4.293 14 C 0.134 3.866 15 N -0.404 5.404 16 C -0.147 4.147 17 F -0.146 7.146 18 H 0.092 0.908 19 H 0.137 0.863 20 H 0.167 0.833 21 H 0.231 0.769 22 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 10.991 1.835 1.918 11.307 hybrid contribution -0.406 -2.493 -0.364 2.552 sum 10.585 -0.659 1.554 10.719 Atomic orbital electron populations 1.70602 1.08464 1.32815 1.33072 1.28340 0.95719 1.06578 0.89099 0.83365 0.75012 0.70504 0.79696 1.17495 1.18312 1.20151 1.20501 0.95876 0.96670 1.43161 0.93194 1.17522 0.92662 0.90692 0.90039 1.20726 0.95095 1.06509 1.07018 1.20389 0.92792 0.91741 0.92910 1.98294 1.87434 1.58129 1.60882 1.19890 1.00597 1.00661 1.08125 1.17306 0.87511 0.89873 0.91952 1.42177 1.11576 1.34026 1.52609 1.17521 0.92174 1.00223 1.04758 1.91216 1.89452 1.65558 1.68345 0.90802 0.86308 0.83257 0.76932 0.75693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.42 13.66 21.82 0.30 -45.12 14 2 C 0.02 0.98 5.41 85.25 0.46 1.45 14 3 Si 1.09 48.31 24.90 68.60 1.71 50.02 14 4 H -0.25 -10.13 6.43 99.48 0.64 -9.49 14 5 H -0.26 -11.27 7.03 99.48 0.70 -10.57 14 6 H -0.28 -11.51 7.11 99.48 0.71 -10.80 14 7 C -0.53 -30.04 9.13 23.44 0.21 -29.82 14 8 H 0.05 3.03 7.96 -2.91 -0.02 3.01 14 9 C 0.10 4.92 5.14 -21.27 -0.11 4.81 14 10 C -0.27 -12.67 7.04 22.76 0.16 -12.51 14 11 C 0.05 1.96 6.31 22.26 0.14 2.10 14 12 Cl -0.08 -2.54 28.94 -2.72 -0.08 -2.62 14 13 C -0.27 -9.78 9.67 22.59 0.22 -9.56 14 14 C 0.24 9.31 6.75 38.14 0.26 9.57 14 15 N -0.86 -24.62 9.09 -51.33 -0.47 -25.09 14 16 C -0.12 -5.81 7.31 22.99 0.17 -5.64 14 17 F -0.17 -8.09 16.12 44.97 0.72 -7.37 14 18 H 0.28 15.31 8.73 -92.71 -0.81 14.50 14 19 H 0.12 5.53 4.37 -2.91 -0.01 5.51 14 20 H 0.15 4.36 8.06 -2.91 -0.02 4.33 14 21 H 0.40 10.95 8.31 -92.71 -0.77 10.18 14 22 H 0.41 8.69 8.84 -92.71 -0.82 7.87 14 Total: -1.00 -58.54 216.31 3.28 -55.25 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -0.41 Total: 14.54 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 1.51 Total: -39.61 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -0.17 Total: -70.22 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 0.72 Total: -7.37 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.71 Total: 50.02 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -0.08 Total: -2.62 kcal Total: -58.54 3.28 -55.25 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715618.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.546 kcal (2) G-P(sol) polarization free energy of solvation -58.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds