Wall clock time and date at job start Mon Mar 30 2020 03:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30917 * 1 3 3 Si 1.86800 * 120.00119 * 2 1 4 4 H 1.48497 * 109.47148 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47257 * 120.00227 * 3 2 1 6 6 H 1.48504 * 109.47173 * 239.99985 * 3 2 1 7 7 C 1.39898 * 120.00081 * 180.27387 * 2 1 3 8 8 H 1.08000 * 119.99952 * 160.42547 * 7 2 1 9 9 C 1.40968 * 119.99822 * 340.42668 * 7 2 1 10 10 C 1.41560 * 120.30483 * 143.42752 * 9 7 2 11 11 N 1.38820 * 120.20520 * 359.97438 * 10 9 7 12 12 C 1.38515 * 119.58564 * 180.02562 * 10 9 7 13 13 C 1.38432 * 120.20642 * 0.02562 * 12 10 9 14 14 Cl 1.73602 * 119.68446 * 179.97438 * 13 12 10 15 15 C 1.38892 * 120.62585 * 0.02562 * 13 12 10 16 16 C 1.37734 * 120.41377 * 359.66638 * 15 13 12 17 17 F 1.35096 * 120.11324 * 180.30058 * 16 15 13 18 18 H 0.97002 * 120.00215 * 359.72194 * 1 2 3 19 19 H 0.96998 * 120.00448 * 359.97438 * 11 10 9 20 20 H 0.97008 * 119.99781 * 179.97438 * 11 10 9 21 21 H 1.08003 * 119.90356 * 180.02562 * 12 10 9 22 22 H 1.07999 * 119.79145 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 1.2783 2.7464 0.0006 5 1 3.0970 1.6964 1.2124 6 1 3.0970 1.6964 -1.2125 7 6 2.0087 -1.2115 -0.0058 8 1 3.0419 -1.2370 -0.3193 9 6 1.3649 -2.3990 0.3975 10 6 1.6529 -3.6236 -0.2516 11 7 2.5718 -3.6637 -1.2914 12 6 1.0112 -4.7813 0.1565 13 6 0.0937 -4.7410 1.1922 14 17 -0.7031 -6.2001 1.6922 15 6 -0.1962 -3.5441 1.8345 16 6 0.4315 -2.3787 1.4538 17 9 0.1494 -1.2190 2.0868 18 1 -0.4850 0.8400 0.0041 19 1 3.0186 -2.8509 -1.5754 20 1 2.7672 -4.5046 -1.7339 21 1 1.2274 -5.7185 -0.3349 22 1 -0.9146 -3.5281 2.6407 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715637.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:05 Heat of formation + Delta-G solvation = -38.945254 kcal Electronic energy + Delta-G solvation = -12146.733035 eV Core-core repulsion = 9641.450751 eV Total energy + Delta-G solvation = -2505.282283 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -46.97950 -37.82733 -35.57795 -33.52282 -33.00355 -29.53163 -27.65609 -25.05535 -21.29965 -20.72677 -17.45900 -16.48186 -16.26728 -15.06480 -14.36307 -13.99083 -13.80093 -13.74161 -13.08891 -12.13121 -12.07144 -11.70141 -11.33869 -11.27747 -10.86285 -10.81507 -10.27494 -10.07858 -9.74491 -9.14785 -8.95697 -7.24885 -6.85081 -6.57918 -4.34041 2.51886 2.76831 3.06161 3.08833 3.13584 3.22983 3.94590 4.52975 5.01724 5.29351 5.92699 6.20667 6.32631 6.72856 6.93948 7.11160 7.20533 7.39325 7.53627 7.90005 8.23908 8.46332 8.68550 8.81753 8.90169 10.20564 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.047580 B = 0.010458 C = 0.008908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.337780 B = 2676.839209 C = 3142.512728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.264 1.264 6 H -0.268 1.268 7 C -0.470 4.470 8 H 0.080 0.920 9 C 0.042 3.958 10 C 0.161 3.839 11 N -0.874 5.874 12 C -0.185 4.185 13 C -0.071 4.071 14 Cl -0.119 7.119 15 C -0.165 4.165 16 C 0.066 3.934 17 F -0.137 7.137 18 H 0.283 0.717 19 H 0.397 0.603 20 H 0.382 0.618 21 H 0.105 0.895 22 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 -3.418 -0.577 4.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.499 4.499 8 H 0.098 0.902 9 C 0.036 3.964 10 C 0.057 3.943 11 N -0.415 5.415 12 C -0.210 4.210 13 C -0.098 4.098 14 Cl -0.091 7.091 15 C -0.186 4.186 16 C 0.044 3.956 17 F -0.115 7.115 18 H 0.094 0.906 19 H 0.226 0.774 20 H 0.209 0.791 21 H 0.123 0.877 22 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.826 -3.316 -0.480 3.816 hybrid contribution 0.295 0.823 -0.152 0.887 sum 2.121 -2.494 -0.632 3.334 Atomic orbital electron populations 1.69781 1.07635 1.29840 1.33088 1.25730 0.94630 1.01013 0.92763 0.86354 0.80087 0.80520 0.79703 1.20399 1.18906 1.19242 1.18950 0.98437 0.91057 1.41486 0.90194 1.17167 0.95061 0.92086 0.92111 1.17408 0.93717 0.92884 0.90282 1.41871 1.48701 1.11736 1.39196 1.19765 1.03073 0.96556 1.01626 1.19456 1.02837 0.85148 1.02400 1.98237 1.80559 1.38847 1.91483 1.20211 1.03980 0.91059 1.03383 1.17131 1.03084 0.80188 0.95246 1.91336 1.92534 1.47452 1.80209 0.90599 0.77400 0.79147 0.87708 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.54 11.11 55.55 0.62 -19.92 14 2 C 0.08 1.96 4.52 -17.32 -0.08 1.89 14 3 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 14 4 H -0.28 -5.69 7.11 56.52 0.40 -5.29 14 5 H -0.26 -5.50 7.11 56.52 0.40 -5.10 14 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 14 7 C -0.47 -11.89 8.12 -37.93 -0.31 -12.20 14 8 H 0.08 1.88 7.14 -52.49 -0.37 1.51 14 9 C 0.04 1.06 5.41 -106.56 -0.58 0.49 14 10 C 0.16 3.62 6.78 -83.33 -0.57 3.05 14 11 N -0.87 -16.13 8.98 32.70 0.29 -15.83 14 12 C -0.19 -3.97 9.64 -39.41 -0.38 -4.35 14 13 C -0.07 -1.55 6.33 -39.27 -0.25 -1.80 14 14 Cl -0.12 -2.24 28.94 -51.86 -1.50 -3.74 14 15 C -0.16 -3.89 9.77 -39.52 -0.39 -4.28 14 16 C 0.07 1.72 6.67 -38.73 -0.26 1.46 14 17 F -0.14 -3.69 14.27 2.25 0.03 -3.66 14 18 H 0.28 6.91 8.30 -40.82 -0.34 6.57 14 19 H 0.40 7.16 7.27 -40.82 -0.30 6.87 14 20 H 0.38 5.78 8.83 -40.82 -0.36 5.42 14 21 H 0.10 1.99 8.06 -52.48 -0.42 1.57 14 22 H 0.11 2.39 8.06 -52.49 -0.42 1.97 14 LS Contribution 219.11 15.07 3.30 3.30 Total: -1.00 -27.16 219.11 -6.10 -33.26 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -1.01 Total: 8.59 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.80 Total: -15.74 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.91 Total: -35.76 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.03 Total: -3.66 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -1.50 Total: -3.74 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -27.16 -6.10 -33.26 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715637.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.688 kcal (2) G-P(sol) polarization free energy of solvation -27.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds