Wall clock time and date at job start Mon Mar 30 2020 03:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30917 * 1 3 3 Si 1.86800 * 120.00119 * 2 1 4 4 H 1.48497 * 109.47148 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47257 * 120.00227 * 3 2 1 6 6 H 1.48504 * 109.47173 * 239.99985 * 3 2 1 7 7 C 1.39898 * 120.00081 * 180.27387 * 2 1 3 8 8 H 1.08000 * 119.99952 * 160.42547 * 7 2 1 9 9 C 1.40968 * 119.99822 * 340.42668 * 7 2 1 10 10 C 1.41560 * 120.30483 * 143.42752 * 9 7 2 11 11 N 1.38820 * 120.20520 * 359.97438 * 10 9 7 12 12 C 1.38515 * 119.58564 * 180.02562 * 10 9 7 13 13 C 1.38432 * 120.20642 * 0.02562 * 12 10 9 14 14 Cl 1.73602 * 119.68446 * 179.97438 * 13 12 10 15 15 C 1.38892 * 120.62585 * 0.02562 * 13 12 10 16 16 C 1.37734 * 120.41377 * 359.66638 * 15 13 12 17 17 F 1.35096 * 120.11324 * 180.30058 * 16 15 13 18 18 H 0.97002 * 120.00215 * 359.72194 * 1 2 3 19 19 H 0.96998 * 120.00448 * 359.97438 * 11 10 9 20 20 H 0.97008 * 119.99781 * 179.97438 * 11 10 9 21 21 H 1.08003 * 119.90356 * 180.02562 * 12 10 9 22 22 H 1.07999 * 119.79145 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 1.2783 2.7464 0.0006 5 1 3.0970 1.6964 1.2124 6 1 3.0970 1.6964 -1.2125 7 6 2.0087 -1.2115 -0.0058 8 1 3.0419 -1.2370 -0.3193 9 6 1.3649 -2.3990 0.3975 10 6 1.6529 -3.6236 -0.2516 11 7 2.5718 -3.6637 -1.2914 12 6 1.0112 -4.7813 0.1565 13 6 0.0937 -4.7410 1.1922 14 17 -0.7031 -6.2001 1.6922 15 6 -0.1962 -3.5441 1.8345 16 6 0.4315 -2.3787 1.4538 17 9 0.1494 -1.2190 2.0868 18 1 -0.4850 0.8400 0.0041 19 1 3.0186 -2.8509 -1.5754 20 1 2.7672 -4.5046 -1.7339 21 1 1.2274 -5.7185 -0.3349 22 1 -0.9146 -3.5281 2.6407 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715637.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:04 Heat of formation + Delta-G solvation = -55.303100 kcal Electronic energy + Delta-G solvation = -12147.442364 eV Core-core repulsion = 9641.450751 eV Total energy + Delta-G solvation = -2505.991613 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.96255 -39.58719 -37.22557 -35.34306 -34.68362 -31.35867 -29.38949 -26.89196 -23.12347 -22.50450 -19.31207 -18.24932 -17.97550 -16.84795 -16.09822 -15.77334 -15.71346 -15.51629 -14.80856 -13.89794 -13.81614 -13.47178 -13.18309 -12.94087 -12.49745 -12.47806 -11.98665 -11.68318 -11.55587 -10.93351 -10.69367 -9.09947 -8.66837 -8.29603 -6.21784 0.72301 0.94126 1.39778 1.47874 1.51639 1.51871 2.23680 2.71615 3.43926 3.46642 4.14862 4.43421 4.58891 4.94932 5.16335 5.27337 5.49081 5.60888 5.72010 6.06801 6.38879 6.71877 6.87209 7.06704 7.41220 8.39793 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.047580 B = 0.010458 C = 0.008908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.337780 B = 2676.839209 C = 3142.512728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.036 3.964 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.494 4.494 8 H 0.090 0.910 9 C 0.007 3.993 10 C 0.165 3.835 11 N -0.859 5.859 12 C -0.190 4.190 13 C -0.063 4.063 14 Cl -0.087 7.087 15 C -0.180 4.180 16 C 0.033 3.967 17 F -0.152 7.152 18 H 0.284 0.716 19 H 0.400 0.600 20 H 0.401 0.599 21 H 0.135 0.865 22 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 -4.355 -1.232 5.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.175 1.175 7 C -0.524 4.524 8 H 0.107 0.893 9 C 0.002 3.998 10 C 0.060 3.940 11 N -0.400 5.400 12 C -0.215 4.215 13 C -0.091 4.091 14 Cl -0.059 7.059 15 C -0.202 4.202 16 C 0.011 3.989 17 F -0.131 7.131 18 H 0.094 0.906 19 H 0.230 0.770 20 H 0.231 0.769 21 H 0.153 0.847 22 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.665 -4.289 -1.165 5.182 hybrid contribution 0.014 0.896 0.056 0.898 sum 2.679 -3.393 -1.109 4.464 Atomic orbital electron populations 1.69860 1.09179 1.30571 1.35072 1.26565 0.95226 1.04237 0.91967 0.85345 0.78739 0.76314 0.79948 1.20225 1.19231 1.17533 1.19231 0.98954 0.91694 1.42475 0.89260 1.17532 0.95960 0.93576 0.92778 1.17586 0.93665 0.92296 0.90488 1.41811 1.47271 1.13019 1.37904 1.20075 1.02523 0.97382 1.01481 1.19679 1.02061 0.85882 1.01527 1.98247 1.79904 1.36552 1.91199 1.20342 1.04524 0.91148 1.04174 1.17558 1.04595 0.80438 0.96317 1.91276 1.92809 1.48452 1.80584 0.90550 0.77030 0.76919 0.84702 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.22 11.11 21.82 0.24 -43.98 14 2 C 0.04 1.80 4.52 85.23 0.38 2.18 14 3 Si 0.97 38.58 29.60 68.60 2.03 40.61 14 4 H -0.28 -10.76 7.11 99.48 0.71 -10.05 14 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 14 6 H -0.25 -9.20 7.11 99.48 0.71 -8.49 14 7 C -0.49 -25.06 8.12 23.34 0.19 -24.87 14 8 H 0.09 4.17 7.14 -2.91 -0.02 4.15 14 9 C 0.01 0.38 5.41 -21.12 -0.11 0.27 14 10 C 0.17 7.20 6.78 38.92 0.26 7.46 14 11 N -0.86 -29.71 8.98 -50.47 -0.45 -30.17 14 12 C -0.19 -7.68 9.64 22.38 0.22 -7.46 14 13 C -0.06 -2.67 6.33 22.47 0.14 -2.53 14 14 Cl -0.09 -3.06 28.94 -2.72 -0.08 -3.14 14 15 C -0.18 -8.48 9.77 22.31 0.22 -8.26 14 16 C 0.03 1.76 6.67 22.82 0.15 1.91 14 17 F -0.15 -8.50 14.27 44.97 0.64 -7.86 14 18 H 0.28 14.24 8.30 -92.71 -0.77 13.47 14 19 H 0.40 13.69 7.27 -92.71 -0.67 13.02 14 20 H 0.40 10.86 8.83 -92.70 -0.82 10.04 14 21 H 0.14 4.59 8.06 -2.91 -0.02 4.56 14 22 H 0.12 5.11 8.06 -2.91 -0.02 5.09 14 Total: -1.00 -57.56 219.11 3.63 -53.93 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -0.21 Total: 21.89 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 1.45 Total: -31.30 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -0.21 Total: -74.14 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 0.64 Total: -7.86 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Atomic # 17 Polarization: -3.06 SS G_CDS: -0.08 Total: -3.14 kcal Total: -57.56 3.63 -53.93 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715637.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.372 kcal (2) G-P(sol) polarization free energy of solvation -57.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds