Wall clock time and date at job start Mon Mar 30 2020 03:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30930 * 1 3 3 Si 1.86803 * 120.00090 * 2 1 4 4 H 1.48497 * 109.47225 * 270.00729 * 3 2 1 5 5 H 1.48503 * 109.46762 * 30.00821 * 3 2 1 6 6 H 1.48494 * 109.46866 * 149.99991 * 3 2 1 7 7 C 1.39843 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00098 * 196.45642 * 7 2 1 9 9 C 1.41064 * 119.99839 * 16.72971 * 7 2 1 10 10 C 1.40878 * 120.17219 * 25.66999 * 9 7 2 11 11 C 1.36321 * 119.97116 * 179.97438 * 10 9 7 12 12 Cl 1.73594 * 119.83494 * 180.02562 * 11 10 9 13 13 C 1.39753 * 120.32786 * 359.97438 * 11 10 9 14 14 N 1.38922 * 119.82821 * 179.97438 * 13 11 10 15 15 C 1.39374 * 120.34687 * 359.97438 * 13 11 10 16 16 C 1.37647 * 120.02597 * 359.71512 * 15 13 11 17 17 F 1.35096 * 120.16852 * 180.27377 * 16 15 13 18 18 H 0.97003 * 119.99841 * 359.97438 * 1 2 3 19 19 H 1.08005 * 120.00856 * 359.97438 * 10 9 7 20 20 H 0.97006 * 119.99501 * 0.02562 * 14 13 11 21 21 H 0.96995 * 120.00176 * 180.02562 * 14 13 11 22 22 H 1.08001 * 119.98526 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.4907 2.0465 -1.4000 5 1 1.4408 2.6526 0.7002 6 1 3.5408 1.4401 0.7000 7 6 2.0086 -1.2111 -0.0005 8 1 3.0554 -1.2303 0.2644 9 6 1.3480 -2.4067 -0.3527 10 6 0.2175 -2.3701 -1.1925 11 6 -0.4174 -3.5281 -1.5307 12 17 -1.8098 -3.4790 -2.5662 13 6 0.0478 -4.7546 -1.0487 14 7 -0.6075 -5.9283 -1.3995 15 6 1.1657 -4.8066 -0.2179 16 6 1.8216 -3.6467 0.1275 17 9 2.9087 -3.6942 0.9281 18 1 -0.4850 0.8401 0.0004 19 1 -0.1461 -1.4250 -1.5681 20 1 -1.3855 -5.8951 -1.9778 21 1 -0.2870 -6.7809 -1.0661 22 1 1.5199 -5.7576 0.1515 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715705.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:48 Heat of formation + Delta-G solvation = -60.748965 kcal Electronic energy + Delta-G solvation = -11984.209674 eV Core-core repulsion = 9477.981911 eV Total energy + Delta-G solvation = -2506.227763 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.26928 -39.71624 -37.12054 -36.23502 -34.15195 -30.86907 -30.38970 -26.41211 -23.46963 -22.55088 -19.38878 -18.28352 -18.07555 -16.94368 -16.40103 -16.05282 -15.77468 -15.45353 -14.50601 -14.18175 -14.13079 -13.55908 -13.16012 -12.86460 -12.47465 -12.23140 -12.01102 -11.94707 -11.45938 -11.31467 -10.61933 -9.32393 -8.70088 -8.44107 -6.18036 0.61292 0.90617 1.40898 1.46373 1.51035 1.53785 2.23884 2.63132 3.22926 3.45796 4.04191 4.21391 4.81885 4.89558 5.16616 5.23811 5.37542 5.56231 5.91052 6.01262 6.44702 6.68831 6.85412 6.92116 7.24052 8.35184 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.032124 B = 0.012021 C = 0.008966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.415824 B = 2328.667893 C = 3122.306008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.494 4.494 8 H 0.071 0.929 9 C 0.024 3.976 10 C -0.107 4.107 11 C -0.090 4.090 12 Cl -0.087 7.087 13 C 0.149 3.851 14 N -0.868 5.868 15 C -0.190 4.190 16 C -0.005 4.005 17 F -0.162 7.162 18 H 0.290 0.710 19 H 0.124 0.876 20 H 0.399 0.601 21 H 0.404 0.596 22 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.847 -4.702 -3.037 5.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.524 4.524 8 H 0.089 0.911 9 C 0.020 3.980 10 C -0.128 4.128 11 C -0.121 4.121 12 Cl -0.058 7.058 13 C 0.045 3.955 14 N -0.413 5.413 15 C -0.213 4.213 16 C -0.026 4.026 17 F -0.141 7.141 18 H 0.100 0.900 19 H 0.142 0.858 20 H 0.228 0.772 21 H 0.234 0.766 22 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.117 -4.501 -3.069 5.845 hybrid contribution 0.206 0.463 0.118 0.520 sum -1.911 -4.039 -2.952 5.355 Atomic orbital electron populations 1.69853 1.08620 1.30652 1.36356 1.26607 0.95537 1.04126 0.91392 0.85210 0.78919 0.76075 0.79592 1.18457 1.19091 1.18734 1.19443 0.97699 0.92138 1.43149 0.91098 1.17673 0.94349 0.92066 0.93929 1.20620 0.97246 0.96446 0.98463 1.20123 0.94268 0.94085 1.03611 1.98237 1.42177 1.98615 1.66818 1.16722 0.94049 0.86234 0.98512 1.41801 1.35537 1.04714 1.59228 1.20080 0.98523 0.97186 1.05555 1.17863 0.89931 0.95058 0.99712 1.91261 1.53193 1.97349 1.72297 0.89967 0.85850 0.77179 0.76611 0.84116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.91 10.96 21.81 0.24 -42.68 14 2 C 0.04 1.90 5.15 85.22 0.44 2.34 14 3 Si 0.98 38.70 29.59 68.60 2.03 40.73 14 4 H -0.26 -9.86 7.11 99.48 0.71 -9.16 14 5 H -0.27 -9.92 7.11 99.48 0.71 -9.21 14 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 14 7 C -0.49 -27.10 8.76 23.35 0.20 -26.89 14 8 H 0.07 3.89 7.74 -2.91 -0.02 3.86 14 9 C 0.02 1.30 5.57 -21.22 -0.12 1.18 14 10 C -0.11 -5.45 8.38 22.47 0.19 -5.26 14 11 C -0.09 -3.98 6.29 22.19 0.14 -3.84 14 12 Cl -0.09 -3.19 27.54 -2.72 -0.07 -3.27 14 13 C 0.15 5.94 6.76 38.66 0.26 6.20 14 14 N -0.87 -25.77 9.00 -51.03 -0.46 -26.23 14 15 C -0.19 -8.00 9.84 22.40 0.22 -7.78 14 16 C 0.00 -0.23 7.30 22.85 0.17 -0.06 14 17 F -0.16 -8.08 16.72 44.97 0.75 -7.33 14 18 H 0.29 13.57 8.30 -92.71 -0.77 12.80 14 19 H 0.12 6.59 6.19 -2.91 -0.02 6.57 14 20 H 0.40 10.87 7.46 -92.70 -0.69 10.18 14 21 H 0.40 9.55 8.83 -92.71 -0.82 8.73 14 22 H 0.14 4.98 8.06 -2.91 -0.02 4.95 14 Total: -1.00 -57.54 219.75 3.77 -53.78 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.22 Total: 19.11 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 1.50 Total: -34.11 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -0.22 Total: -68.90 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 0.75 Total: -7.33 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.07 Total: -3.27 kcal Total: -57.54 3.77 -53.78 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715705.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.970 kcal (2) G-P(sol) polarization free energy of solvation -57.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds