Wall clock time and date at job start Mon Mar 30 2020 03:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86799 * 120.00406 * 2 1 4 4 H 1.48492 * 109.47385 * 275.27794 * 3 2 1 5 5 H 1.48503 * 109.46977 * 35.27605 * 3 2 1 6 6 H 1.48502 * 109.46859 * 155.27318 * 3 2 1 7 7 C 1.39921 * 119.99426 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00619 * 340.65736 * 7 2 1 9 9 C 1.41255 * 119.99703 * 160.66126 * 7 2 1 10 10 C 1.41055 * 120.23789 * 316.37742 * 9 7 2 11 11 F 1.35101 * 120.08713 * 359.97438 * 10 9 7 12 12 C 1.37901 * 119.82951 * 180.02562 * 10 9 7 13 13 C 1.38491 * 120.31983 * 359.97438 * 12 10 9 14 14 C 1.39245 * 120.48360 * 0.25825 * 13 12 10 15 15 N 1.39887 * 119.91635 * 179.72444 * 14 13 12 16 16 C 1.38356 * 120.16185 * 359.48270 * 14 13 12 17 17 Cl 1.73594 * 120.16301 * 180.28260 * 16 14 13 18 18 H 0.97002 * 119.99688 * 359.97438 * 1 2 3 19 19 H 1.07999 * 119.84111 * 179.97438 * 12 10 9 20 20 H 1.07998 * 119.75361 * 179.97438 * 13 12 10 21 21 H 0.96998 * 120.00214 * 359.97438 * 15 14 13 22 22 H 0.97006 * 120.00066 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3788 2.1108 -1.3940 5 1 1.5004 2.6179 0.8086 6 1 3.5916 1.4103 0.5857 7 6 2.0081 -1.2118 -0.0005 8 1 1.5139 -2.1209 0.3088 9 6 3.3609 -1.2462 -0.4057 10 6 3.7785 -0.5325 -1.5484 11 9 2.8849 0.1874 -2.2614 12 6 5.1012 -0.5724 -1.9367 13 6 6.0213 -1.3093 -1.2097 14 6 5.6225 -2.0227 -0.0823 15 7 6.5607 -2.7677 0.6399 16 6 4.3016 -1.9923 0.3282 17 17 3.8058 -2.8757 1.7380 18 1 -0.4850 0.8401 0.0004 19 1 5.4211 -0.0264 -2.8118 20 1 7.0547 -1.3345 -1.5222 21 1 7.4877 -2.7872 0.3549 22 1 6.2841 -3.2654 1.4252 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715719.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:10 Heat of formation + Delta-G solvation = -35.734660 kcal Electronic energy + Delta-G solvation = -12279.247544 eV Core-core repulsion = 9774.104483 eV Total energy + Delta-G solvation = -2505.143061 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.55147 -38.01090 -35.14581 -34.18636 -32.89631 -30.36361 -27.31107 -25.26578 -21.33037 -20.94843 -17.87352 -16.52039 -16.27255 -15.82616 -14.85956 -14.19436 -14.13586 -13.47016 -13.03740 -12.43239 -12.32407 -11.84361 -11.70081 -11.19107 -10.67346 -10.53671 -10.18931 -9.90506 -9.61559 -9.25767 -9.11303 -7.66187 -6.92371 -6.61933 -4.56538 2.29305 2.50510 3.22642 3.25945 3.34836 3.45667 4.06425 4.40758 4.51632 5.07944 5.67693 5.90996 6.10097 6.43288 6.77020 6.98267 7.08671 7.20958 7.47916 7.65923 8.13266 8.31346 8.35667 8.47854 8.71024 10.08078 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.032233 B = 0.016102 C = 0.012208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.454219 B = 1738.457701 C = 2293.014451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.095 3.905 3 Si 0.907 3.093 4 H -0.257 1.257 5 H -0.292 1.292 6 H -0.251 1.251 7 C -0.444 4.444 8 H 0.103 0.897 9 C 0.104 3.896 10 C -0.053 4.053 11 F -0.146 7.146 12 C -0.074 4.074 13 C -0.274 4.274 14 C 0.244 3.756 15 N -0.884 5.884 16 C -0.173 4.173 17 Cl -0.097 7.097 18 H 0.286 0.714 19 H 0.112 0.888 20 H 0.110 0.890 21 H 0.390 0.610 22 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.520 -1.108 0.491 8.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.126 4.126 3 Si 0.732 3.268 4 H -0.182 1.182 5 H -0.219 1.219 6 H -0.174 1.174 7 C -0.472 4.472 8 H 0.120 0.880 9 C 0.098 3.902 10 C -0.074 4.074 11 F -0.125 7.125 12 C -0.094 4.094 13 C -0.298 4.298 14 C 0.140 3.860 15 N -0.426 5.426 16 C -0.205 4.205 17 Cl -0.069 7.069 18 H 0.096 0.904 19 H 0.130 0.870 20 H 0.128 0.872 21 H 0.217 0.783 22 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.103 -1.037 0.570 8.189 hybrid contribution 0.284 0.531 0.179 0.628 sum 8.387 -0.506 0.749 8.435 Atomic orbital electron populations 1.69700 1.08169 1.30385 1.33863 1.26057 0.94693 1.01568 0.90265 0.86493 0.81098 0.80004 0.79185 1.18191 1.21893 1.17414 1.19238 0.92554 0.96851 1.38520 0.87951 1.17240 0.93510 0.89905 0.89499 1.17592 0.86996 1.07126 0.95701 1.91213 1.68001 1.75996 1.77304 1.20455 0.91526 0.98491 0.98942 1.19606 0.98728 1.10763 1.00686 1.17274 0.87440 0.90549 0.90724 1.42479 1.09627 1.56782 1.33665 1.20034 0.91299 1.13863 0.95353 1.98204 1.91952 1.75405 1.41312 0.90356 0.87025 0.87188 0.78322 0.77776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.75 13.93 55.55 0.77 -20.98 14 2 C 0.09 2.56 4.98 -17.33 -0.09 2.47 14 3 Si 0.91 21.90 24.72 -169.99 -4.20 17.70 14 4 H -0.26 -6.17 6.29 56.52 0.36 -5.81 14 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 14 6 H -0.25 -6.15 7.11 56.52 0.40 -5.75 14 7 C -0.44 -12.18 8.55 -37.81 -0.32 -12.51 14 8 H 0.10 2.95 7.85 -52.49 -0.41 2.54 14 9 C 0.10 2.65 4.68 -106.75 -0.50 2.15 14 10 C -0.05 -1.29 5.66 -38.64 -0.22 -1.51 14 11 F -0.15 -3.72 12.90 2.25 0.03 -3.69 14 12 C -0.07 -1.56 9.99 -39.61 -0.40 -1.96 14 13 C -0.27 -5.33 9.89 -39.11 -0.39 -5.72 14 14 C 0.24 4.91 6.74 -83.76 -0.56 4.35 14 15 N -0.88 -13.83 9.05 32.41 0.29 -13.54 14 16 C -0.17 -3.99 6.39 -38.60 -0.25 -4.23 14 17 Cl -0.10 -2.03 26.54 -51.86 -1.38 -3.40 14 18 H 0.29 7.09 8.30 -40.82 -0.34 6.75 14 19 H 0.11 2.03 8.06 -52.49 -0.42 1.61 14 20 H 0.11 1.78 8.06 -52.49 -0.42 1.36 14 21 H 0.39 4.87 8.84 -40.82 -0.36 4.50 14 22 H 0.39 5.86 7.48 -40.82 -0.31 5.56 14 LS Contribution 213.11 15.07 3.21 3.21 Total: -1.00 -28.12 213.11 -5.10 -33.22 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -1.10 Total: 4.45 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.72 Total: -16.96 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 1.07 Total: -34.52 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.03 Total: -3.69 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.20 Total: 17.70 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -1.38 Total: -3.40 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -28.12 -5.10 -33.22 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715719.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.517 kcal (2) G-P(sol) polarization free energy of solvation -28.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds