Wall clock time and date at job start Mon Mar 30 2020 03:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86799 * 120.00406 * 2 1 4 4 H 1.48492 * 109.47385 * 275.27794 * 3 2 1 5 5 H 1.48503 * 109.46977 * 35.27605 * 3 2 1 6 6 H 1.48502 * 109.46859 * 155.27318 * 3 2 1 7 7 C 1.39921 * 119.99426 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00619 * 340.65736 * 7 2 1 9 9 C 1.41255 * 119.99703 * 160.66126 * 7 2 1 10 10 C 1.41055 * 120.23789 * 316.37742 * 9 7 2 11 11 F 1.35101 * 120.08713 * 359.97438 * 10 9 7 12 12 C 1.37901 * 119.82951 * 180.02562 * 10 9 7 13 13 C 1.38491 * 120.31983 * 359.97438 * 12 10 9 14 14 C 1.39245 * 120.48360 * 0.25825 * 13 12 10 15 15 N 1.39887 * 119.91635 * 179.72444 * 14 13 12 16 16 C 1.38356 * 120.16185 * 359.48270 * 14 13 12 17 17 Cl 1.73594 * 120.16301 * 180.28260 * 16 14 13 18 18 H 0.97002 * 119.99688 * 359.97438 * 1 2 3 19 19 H 1.07999 * 119.84111 * 179.97438 * 12 10 9 20 20 H 1.07998 * 119.75361 * 179.97438 * 13 12 10 21 21 H 0.96998 * 120.00214 * 359.97438 * 15 14 13 22 22 H 0.97006 * 120.00066 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3788 2.1108 -1.3940 5 1 1.5004 2.6179 0.8086 6 1 3.5916 1.4103 0.5857 7 6 2.0081 -1.2118 -0.0005 8 1 1.5139 -2.1209 0.3088 9 6 3.3609 -1.2462 -0.4057 10 6 3.7785 -0.5325 -1.5484 11 9 2.8849 0.1874 -2.2614 12 6 5.1012 -0.5724 -1.9367 13 6 6.0213 -1.3093 -1.2097 14 6 5.6225 -2.0227 -0.0823 15 7 6.5607 -2.7677 0.6399 16 6 4.3016 -1.9923 0.3282 17 17 3.8058 -2.8757 1.7380 18 1 -0.4850 0.8401 0.0004 19 1 5.4211 -0.0264 -2.8118 20 1 7.0547 -1.3345 -1.5222 21 1 7.4877 -2.7872 0.3549 22 1 6.2841 -3.2654 1.4252 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715719.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:10 Heat of formation + Delta-G solvation = -54.933806 kcal Electronic energy + Delta-G solvation = -12280.080082 eV Core-core repulsion = 9774.104483 eV Total energy + Delta-G solvation = -2505.975599 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.42307 -39.71247 -36.85396 -35.95364 -34.59678 -32.15450 -28.96908 -27.09757 -23.06750 -22.70657 -19.74561 -18.11750 -18.03073 -17.53685 -16.64175 -16.03170 -15.82006 -15.19864 -14.95165 -14.19827 -14.00781 -13.55457 -13.49090 -13.04583 -12.53889 -12.19290 -12.02717 -11.66689 -11.36298 -11.06439 -10.89362 -9.45587 -8.86917 -8.20553 -6.55732 0.54512 0.73621 1.30431 1.36193 1.43811 1.72510 2.14914 2.57446 3.10850 3.21544 3.97508 4.27389 4.51888 4.73592 5.09864 5.21039 5.36891 5.55806 5.69101 5.92812 6.26072 6.51847 6.66663 6.77812 7.14182 8.20279 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.032233 B = 0.016102 C = 0.012208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.454219 B = 1738.457701 C = 2293.014451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.062 3.938 3 Si 0.950 3.050 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.482 4.482 8 H 0.068 0.932 9 C 0.085 3.915 10 C -0.085 4.085 11 F -0.159 7.159 12 C -0.069 4.069 13 C -0.247 4.247 14 C 0.247 3.753 15 N -0.863 5.863 16 C -0.189 4.189 17 Cl -0.088 7.088 18 H 0.291 0.709 19 H 0.146 0.854 20 H 0.158 0.842 21 H 0.411 0.589 22 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.045 -1.024 0.068 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.154 4.154 3 Si 0.774 3.226 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.511 4.511 8 H 0.086 0.914 9 C 0.081 3.919 10 C -0.107 4.107 11 F -0.139 7.139 12 C -0.089 4.089 13 C -0.270 4.270 14 C 0.140 3.860 15 N -0.405 5.405 16 C -0.221 4.221 17 Cl -0.059 7.059 18 H 0.102 0.898 19 H 0.164 0.836 20 H 0.176 0.824 21 H 0.242 0.758 22 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 11.678 -0.979 0.166 11.721 hybrid contribution -0.462 0.317 0.296 0.633 sum 11.217 -0.662 0.462 11.246 Atomic orbital electron populations 1.69732 1.09044 1.31141 1.37205 1.26593 0.95180 1.03578 0.90019 0.85833 0.79869 0.77784 0.79157 1.18122 1.20458 1.18032 1.19095 0.94106 0.96107 1.41809 0.91351 1.17440 0.93261 0.91084 0.90133 1.17968 0.88397 1.08222 0.96127 1.91170 1.68773 1.76387 1.77521 1.20895 0.90065 0.98095 0.99846 1.20230 1.00580 1.07471 0.98733 1.17443 0.86999 0.90458 0.91130 1.42412 1.09991 1.55107 1.32982 1.20348 0.92457 1.13486 0.95851 1.98202 1.92141 1.74994 1.40595 0.89825 0.83611 0.82420 0.75834 0.77101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.32 13.93 21.82 0.30 -48.01 14 2 C 0.06 3.45 4.98 85.24 0.42 3.87 14 3 Si 0.95 45.58 24.72 68.60 1.70 47.28 14 4 H -0.26 -12.10 6.29 99.48 0.63 -11.48 14 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 14 6 H -0.26 -12.32 7.11 99.48 0.71 -11.61 14 7 C -0.48 -27.53 8.55 23.42 0.20 -27.33 14 8 H 0.07 4.21 7.85 -2.91 -0.02 4.19 14 9 C 0.09 4.36 4.68 -21.24 -0.10 4.26 14 10 C -0.09 -4.09 5.66 22.88 0.13 -3.96 14 11 F -0.16 -8.09 12.90 44.97 0.58 -7.51 14 12 C -0.07 -2.64 9.99 22.25 0.22 -2.42 14 13 C -0.25 -8.20 9.89 22.57 0.22 -7.97 14 14 C 0.25 8.90 6.74 38.13 0.26 9.16 14 15 N -0.86 -22.79 9.05 -51.37 -0.46 -23.25 14 16 C -0.19 -8.41 6.39 22.90 0.15 -8.26 14 17 Cl -0.09 -3.60 26.54 -2.72 -0.07 -3.68 14 18 H 0.29 15.11 8.30 -92.71 -0.77 14.34 14 19 H 0.15 4.53 8.06 -2.91 -0.02 4.51 14 20 H 0.16 3.83 8.06 -2.91 -0.02 3.80 14 21 H 0.41 7.77 8.84 -92.71 -0.82 6.95 14 22 H 0.40 10.27 7.48 -92.70 -0.69 9.58 14 Total: -1.00 -62.52 213.11 3.23 -59.29 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -0.31 Total: 8.53 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 1.50 Total: -32.65 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -0.16 Total: -71.26 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 0.58 Total: -7.51 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.70 Total: 47.28 kcal Atomic # 17 Polarization: -3.60 SS G_CDS: -0.07 Total: -3.68 kcal Total: -62.52 3.23 -59.29 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715719.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.354 kcal (2) G-P(sol) polarization free energy of solvation -62.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds