Wall clock time and date at job start Mon Mar 30 2020 03:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86797 * 120.00193 * 2 1 4 4 H 1.48498 * 109.47520 * 239.99601 * 3 2 1 5 5 H 1.48499 * 109.47081 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47439 * 119.99123 * 3 2 1 7 7 C 1.39915 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00229 * 196.70006 * 7 2 1 9 9 C 1.41274 * 119.99499 * 16.97807 * 7 2 1 10 10 C 1.40821 * 120.22320 * 25.42065 * 9 7 2 11 11 C 1.36512 * 120.04383 * 180.02562 * 10 9 7 12 12 C 1.38776 * 120.49598 * 359.97438 * 11 10 9 13 13 Cl 1.73607 * 119.78130 * 179.97438 * 12 11 10 14 14 C 1.39223 * 120.44015 * 359.97438 * 12 11 10 15 15 N 1.39961 * 120.03135 * 180.02562 * 14 12 11 16 16 C 1.38571 * 119.94487 * 359.75718 * 14 12 11 17 17 F 1.35100 * 120.24378 * 180.28382 * 16 14 12 18 18 H 0.96999 * 120.00360 * 0.02562 * 1 2 3 19 19 H 1.08007 * 119.97412 * 0.02562 * 10 9 7 20 20 H 1.07998 * 119.75525 * 180.02562 * 11 10 9 21 21 H 0.97005 * 119.99646 * 359.97438 * 15 14 12 22 22 H 0.96997 * 120.00131 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0965 1.6964 -1.2124 5 1 1.2776 2.7464 -0.0006 6 1 3.0963 1.6965 1.2126 7 6 2.0082 -1.2117 0.0005 8 1 3.0540 -1.2313 0.2693 9 6 1.3479 -2.4086 -0.3562 10 6 0.2177 -2.3717 -1.1955 11 6 -0.4178 -3.5304 -1.5374 12 6 0.0414 -4.7516 -1.0643 13 17 -0.7814 -6.2137 -1.5104 14 6 1.1574 -4.8119 -0.2342 15 7 1.6135 -6.0481 0.2377 16 6 1.8198 -3.6474 0.1200 17 9 2.9069 -3.6994 0.9205 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1465 -1.4259 -1.5688 20 1 -1.2839 -3.4967 -2.1817 21 1 1.1516 -6.8634 -0.0133 22 1 2.3913 -6.0897 0.8157 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715819.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:56 Heat of formation + Delta-G solvation = -63.632598 kcal Electronic energy + Delta-G solvation = -12013.231750 eV Core-core repulsion = 9506.878944 eV Total energy + Delta-G solvation = -2506.352807 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.11903 -39.51732 -37.10138 -36.12287 -34.52098 -31.42120 -29.09533 -27.16865 -23.02325 -22.74450 -19.41404 -18.24894 -18.01988 -17.00540 -16.64706 -16.03427 -15.66639 -15.23470 -14.82505 -13.95313 -13.91053 -13.60181 -13.22302 -12.81691 -12.30921 -12.13696 -11.99323 -11.67816 -11.56832 -11.40903 -10.87010 -9.30572 -8.76473 -8.23718 -6.47969 0.70749 1.02736 1.39831 1.50225 1.53577 1.63645 2.18792 2.59416 3.08313 3.49818 4.07060 4.38390 4.80841 4.93799 5.14499 5.23683 5.51686 5.78589 5.91714 6.02745 6.41047 6.58536 6.73885 6.85666 7.04862 8.20238 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.047685 B = 0.009822 C = 0.008320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.047963 B = 2850.133015 C = 3364.588062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.041 3.959 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.479 4.479 8 H 0.076 0.924 9 C 0.096 3.904 10 C -0.195 4.195 11 C -0.056 4.056 12 C -0.211 4.211 13 Cl -0.089 7.089 14 C 0.229 3.771 15 N -0.868 5.868 16 C -0.131 4.131 17 F -0.165 7.165 18 H 0.297 0.703 19 H 0.121 0.879 20 H 0.127 0.873 21 H 0.404 0.596 22 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 -3.397 -1.505 3.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.178 4.178 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.507 4.507 8 H 0.094 0.906 9 C 0.091 3.909 10 C -0.215 4.215 11 C -0.076 4.076 12 C -0.243 4.243 13 Cl -0.061 7.061 14 C 0.123 3.877 15 N -0.411 5.411 16 C -0.156 4.156 17 F -0.145 7.145 18 H 0.108 0.892 19 H 0.139 0.861 20 H 0.145 0.855 21 H 0.234 0.766 22 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.234 -3.346 -1.517 3.681 hybrid contribution 0.507 0.125 0.378 0.645 sum 0.273 -3.221 -1.139 3.427 Atomic orbital electron populations 1.69837 1.08904 1.31547 1.32331 1.26794 0.95606 1.04518 0.90837 0.85169 0.78869 0.75106 0.80169 1.18189 1.18382 1.18652 1.19755 0.98093 0.92179 1.40626 0.90617 1.17839 0.92324 0.91243 0.89454 1.20681 0.99998 0.97385 1.03485 1.20364 0.98685 0.90287 0.98219 1.19501 1.02124 0.87189 1.15451 1.98200 1.78554 1.36967 1.92421 1.17109 0.92028 0.85652 0.92947 1.42220 1.36277 1.04515 1.58128 1.17202 0.95169 0.93652 1.09615 1.91191 1.53206 1.97125 1.72962 0.89218 0.86102 0.85534 0.76568 0.77031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.48 10.96 21.82 0.24 -39.24 14 2 C 0.04 1.96 5.15 85.24 0.44 2.40 14 3 Si 0.99 36.43 29.59 68.60 2.03 38.46 14 4 H -0.26 -9.32 7.11 99.48 0.71 -8.61 14 5 H -0.26 -8.84 7.11 99.48 0.71 -8.13 14 6 H -0.26 -9.58 7.11 99.48 0.71 -8.87 14 7 C -0.48 -25.54 8.77 23.42 0.21 -25.34 14 8 H 0.08 4.02 7.74 -2.91 -0.02 4.00 14 9 C 0.10 5.13 5.57 -21.26 -0.12 5.01 14 10 C -0.19 -9.80 8.63 22.50 0.19 -9.60 14 11 C -0.06 -2.51 9.74 22.00 0.21 -2.29 14 12 C -0.21 -9.06 6.36 22.64 0.14 -8.91 14 13 Cl -0.09 -3.10 27.56 -2.72 -0.07 -3.18 14 14 C 0.23 10.19 6.75 38.16 0.26 10.45 14 15 N -0.87 -30.82 9.05 -51.21 -0.46 -31.29 14 16 C -0.13 -6.68 7.32 22.99 0.17 -6.51 14 17 F -0.17 -8.28 16.10 44.97 0.72 -7.56 14 18 H 0.30 12.98 8.30 -92.71 -0.77 12.21 14 19 H 0.12 6.18 6.19 -2.91 -0.02 6.17 14 20 H 0.13 4.95 8.06 -2.91 -0.02 4.93 14 21 H 0.40 12.41 7.49 -92.70 -0.69 11.72 14 22 H 0.40 13.09 8.32 -92.71 -0.77 12.32 14 Total: -1.00 -55.64 218.96 3.78 -51.86 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -0.18 Total: 25.73 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 1.50 Total: -34.79 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -0.22 Total: -70.53 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 0.72 Total: -7.56 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Atomic # 17 Polarization: -3.10 SS G_CDS: -0.07 Total: -3.18 kcal Total: -55.64 3.78 -51.86 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715819.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.771 kcal (2) G-P(sol) polarization free energy of solvation -55.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds