Wall clock time and date at job start Mon Mar 30 2020 03:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30891 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48499 * 109.46774 * 275.38753 * 3 2 1 5 5 H 1.48497 * 109.47237 * 35.38826 * 3 2 1 6 6 H 1.48500 * 109.46889 * 155.38822 * 3 2 1 7 7 C 1.39917 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00245 * 342.17732 * 7 2 1 9 9 C 1.41037 * 119.99568 * 162.18550 * 7 2 1 10 10 C 1.40765 * 120.28775 * 329.62509 * 9 7 2 11 11 C 1.37590 * 119.82864 * 180.02562 * 10 9 7 12 12 F 1.35103 * 119.78332 * 180.02562 * 11 10 9 13 13 C 1.39149 * 120.42993 * 0.02562 * 11 10 9 14 14 C 1.38204 * 120.58779 * 359.68086 * 13 11 10 15 15 Cl 1.73595 * 119.92354 * 180.30492 * 14 13 11 16 16 C 1.38821 * 120.15135 * 0.59674 * 14 13 11 17 17 N 1.38876 * 120.21188 * 179.69513 * 16 14 13 18 18 H 0.96996 * 119.99877 * 0.02562 * 1 2 3 19 19 H 1.07993 * 120.08280 * 0.02562 * 10 9 7 20 20 H 1.07995 * 119.70111 * 179.97438 * 13 11 10 21 21 H 0.96998 * 119.99828 * 179.72178 * 17 16 14 22 22 H 0.97003 * 119.99698 * 359.73852 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3765 2.1121 -1.3939 5 1 1.5020 2.6171 0.8108 6 1 3.5927 1.4099 0.5831 7 6 2.0084 -1.2118 0.0005 8 1 1.5073 -2.1245 0.2872 9 6 3.3681 -1.2412 -0.3731 10 6 3.8678 -0.3142 -1.3072 11 6 5.1958 -0.3518 -1.6654 12 9 5.6746 0.5386 -2.5616 13 6 6.0488 -1.3009 -1.1106 14 6 5.5781 -2.2154 -0.1874 15 17 6.6592 -3.3870 0.4997 16 6 4.2414 -2.2031 0.1870 17 7 3.7657 -3.1255 1.1098 18 1 -0.4850 0.8400 -0.0004 19 1 3.2106 0.4245 -1.7415 20 1 7.0889 -1.3200 -1.4004 21 1 2.8320 -3.1116 1.3723 22 1 4.3672 -3.7836 1.4920 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575715846.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:01 Heat of formation + Delta-G solvation = -45.207471 kcal Electronic energy + Delta-G solvation = -12076.341174 eV Core-core repulsion = 9570.787341 eV Total energy + Delta-G solvation = -2505.553833 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.86465 -38.23911 -35.72957 -33.66179 -33.29061 -30.49749 -27.41456 -25.29977 -21.99762 -20.61065 -17.88215 -16.65238 -16.43738 -15.68918 -14.79260 -14.54575 -14.24378 -13.76466 -13.20147 -12.63824 -12.33871 -11.98766 -11.88051 -11.29019 -11.05748 -10.52232 -10.32994 -10.13331 -9.95296 -9.38514 -9.26131 -7.85050 -7.10628 -6.67734 -4.55983 2.22080 2.41899 2.94873 3.05890 3.14020 3.25437 3.89070 4.23963 4.85020 5.08903 5.52531 5.92606 6.09425 6.42890 6.66312 6.88203 6.98306 7.18705 7.39095 7.72549 8.03925 8.15075 8.48797 8.57334 8.70993 9.90546 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.032125 B = 0.013351 C = 0.010083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.393874 B = 2096.737515 C = 2776.390264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.437 4.437 8 H 0.095 0.905 9 C 0.076 3.924 10 C -0.255 4.255 11 C 0.099 3.901 12 F -0.161 7.161 13 C -0.224 4.224 14 C -0.065 4.065 15 Cl -0.107 7.107 16 C 0.149 3.851 17 N -0.870 5.870 18 H 0.288 0.712 19 H 0.117 0.883 20 H 0.115 0.885 21 H 0.400 0.600 22 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -1.818 1.369 5.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.166 1.166 7 C -0.466 4.466 8 H 0.113 0.887 9 C 0.070 3.930 10 C -0.277 4.277 11 C 0.078 3.922 12 F -0.140 7.140 13 C -0.245 4.245 14 C -0.098 4.098 15 Cl -0.079 7.079 16 C 0.044 3.956 17 N -0.412 5.412 18 H 0.099 0.901 19 H 0.134 0.866 20 H 0.133 0.867 21 H 0.230 0.770 22 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.299 -1.765 1.390 5.756 hybrid contribution 0.296 0.573 0.090 0.651 sum 5.596 -1.192 1.479 5.909 Atomic orbital electron populations 1.69689 1.08012 1.30613 1.34054 1.26108 0.94764 1.01679 0.90822 0.86319 0.81375 0.79690 0.79272 1.19326 1.21541 1.16585 1.19118 0.92244 0.96191 1.39011 0.88688 1.17017 0.92888 0.91078 0.92040 1.20730 0.93967 1.07361 1.05632 1.17043 0.92415 0.90433 0.92266 1.91355 1.89089 1.67106 1.66442 1.19819 0.99207 1.00459 1.05060 1.19545 0.88676 0.97603 1.04007 1.98245 1.65430 1.59336 1.84878 1.17604 0.89769 0.94736 0.93499 1.42052 1.13452 1.36802 1.48888 0.90130 0.86570 0.86661 0.77020 0.78588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.09 13.93 55.55 0.77 -19.31 14 2 C 0.09 2.13 5.41 -17.32 -0.09 2.04 14 3 Si 0.91 20.18 24.52 -169.99 -4.17 16.01 14 4 H -0.27 -5.90 6.72 56.52 0.38 -5.52 14 5 H -0.29 -6.16 7.11 56.52 0.40 -5.76 14 6 H -0.24 -5.59 6.86 56.52 0.39 -5.20 14 7 C -0.44 -10.84 8.91 -37.89 -0.34 -11.18 14 8 H 0.10 2.38 7.03 -52.49 -0.37 2.01 14 9 C 0.08 1.81 5.11 -106.65 -0.54 1.27 14 10 C -0.26 -6.12 7.12 -38.86 -0.28 -6.40 14 11 C 0.10 2.27 7.28 -39.48 -0.29 1.98 14 12 F -0.16 -3.53 17.26 2.25 0.04 -3.50 14 13 C -0.22 -4.78 9.79 -39.26 -0.38 -5.17 14 14 C -0.07 -1.36 6.33 -39.38 -0.25 -1.61 14 15 Cl -0.11 -1.86 27.57 -51.86 -1.43 -3.29 14 16 C 0.15 3.25 6.79 -83.22 -0.56 2.68 14 17 N -0.87 -16.15 8.94 32.75 0.29 -15.85 14 18 H 0.29 6.59 8.30 -40.82 -0.34 6.25 14 19 H 0.12 2.80 4.77 -52.49 -0.25 2.55 14 20 H 0.12 2.23 8.06 -52.49 -0.42 1.81 14 21 H 0.40 7.22 7.13 -40.82 -0.29 6.93 14 22 H 0.39 6.28 7.48 -40.82 -0.31 5.98 14 LS Contribution 212.41 15.07 3.20 3.20 Total: -1.00 -25.24 212.41 -4.84 -30.08 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -0.81 Total: 9.05 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.74 Total: -16.39 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 1.07 Total: -35.16 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.04 Total: -3.50 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.17 Total: 16.01 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -1.43 Total: -3.29 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -25.24 -4.84 -30.08 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715846.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.126 kcal (2) G-P(sol) polarization free energy of solvation -25.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds