Wall clock time and date at job start Mon Mar 30 2020 03:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30891 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48499 * 109.46774 * 275.38753 * 3 2 1 5 5 H 1.48497 * 109.47237 * 35.38826 * 3 2 1 6 6 H 1.48500 * 109.46889 * 155.38822 * 3 2 1 7 7 C 1.39917 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00245 * 342.17732 * 7 2 1 9 9 C 1.41037 * 119.99568 * 162.18550 * 7 2 1 10 10 C 1.40765 * 120.28775 * 329.62509 * 9 7 2 11 11 C 1.37590 * 119.82864 * 180.02562 * 10 9 7 12 12 F 1.35103 * 119.78332 * 180.02562 * 11 10 9 13 13 C 1.39149 * 120.42993 * 0.02562 * 11 10 9 14 14 C 1.38204 * 120.58779 * 359.68086 * 13 11 10 15 15 Cl 1.73595 * 119.92354 * 180.30492 * 14 13 11 16 16 C 1.38821 * 120.15135 * 0.59674 * 14 13 11 17 17 N 1.38876 * 120.21188 * 179.69513 * 16 14 13 18 18 H 0.96996 * 119.99877 * 0.02562 * 1 2 3 19 19 H 1.07993 * 120.08280 * 0.02562 * 10 9 7 20 20 H 1.07995 * 119.70111 * 179.97438 * 13 11 10 21 21 H 0.96998 * 119.99828 * 179.72178 * 17 16 14 22 22 H 0.97003 * 119.99698 * 359.73852 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3765 2.1121 -1.3939 5 1 1.5020 2.6171 0.8108 6 1 3.5927 1.4099 0.5831 7 6 2.0084 -1.2118 0.0005 8 1 1.5073 -2.1245 0.2872 9 6 3.3681 -1.2412 -0.3731 10 6 3.8678 -0.3142 -1.3072 11 6 5.1958 -0.3518 -1.6654 12 9 5.6746 0.5386 -2.5616 13 6 6.0488 -1.3009 -1.1106 14 6 5.5781 -2.2154 -0.1874 15 17 6.6592 -3.3870 0.4997 16 6 4.2414 -2.2031 0.1870 17 7 3.7657 -3.1255 1.1098 18 1 -0.4850 0.8400 -0.0004 19 1 3.2106 0.4245 -1.7415 20 1 7.0889 -1.3200 -1.4004 21 1 2.8320 -3.1116 1.3723 22 1 4.3672 -3.7836 1.4920 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715846.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:01 Heat of formation + Delta-G solvation = -60.599721 kcal Electronic energy + Delta-G solvation = -12077.008632 eV Core-core repulsion = 9570.787341 eV Total energy + Delta-G solvation = -2506.221291 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.60021 -39.96734 -37.28822 -35.46516 -34.94695 -32.28272 -29.13697 -27.08756 -23.76301 -22.36145 -19.68717 -18.38242 -18.10864 -17.40415 -16.57436 -16.29732 -15.90659 -15.48561 -14.97351 -14.32088 -13.99724 -13.74973 -13.64266 -13.01685 -12.81324 -12.13899 -11.99324 -11.78669 -11.73368 -11.14627 -10.99182 -9.61298 -8.94470 -8.36448 -6.40646 0.45259 0.65269 1.27961 1.32294 1.37816 1.47199 2.10062 2.43479 3.25474 3.28491 3.76751 4.24769 4.29122 4.66763 4.94022 5.13539 5.25192 5.40784 5.58891 5.92765 6.22082 6.36755 6.69926 6.85609 7.21392 8.11786 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.032125 B = 0.013351 C = 0.010083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.393874 B = 2096.737515 C = 2776.390264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.060 3.940 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.057 3.943 10 C -0.264 4.264 11 C 0.080 3.920 12 F -0.158 7.158 13 C -0.205 4.205 14 C -0.075 4.075 15 Cl -0.071 7.071 16 C 0.149 3.851 17 N -0.858 5.858 18 H 0.295 0.705 19 H 0.109 0.891 20 H 0.140 0.860 21 H 0.403 0.597 22 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.139 -2.233 1.668 7.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.157 4.157 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.051 3.949 10 C -0.286 4.286 11 C 0.059 3.941 12 F -0.137 7.137 13 C -0.226 4.226 14 C -0.108 4.108 15 Cl -0.042 7.042 16 C 0.043 3.957 17 N -0.399 5.399 18 H 0.106 0.894 19 H 0.127 0.873 20 H 0.157 0.843 21 H 0.233 0.767 22 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 6.952 -2.202 1.707 7.489 hybrid contribution -0.030 0.558 0.001 0.559 sum 6.921 -1.644 1.707 7.316 Atomic orbital electron populations 1.69701 1.08699 1.31529 1.36001 1.26553 0.95161 1.03371 0.90651 0.85707 0.79960 0.77934 0.79147 1.19418 1.20102 1.17891 1.19116 0.92941 0.96015 1.40662 0.89983 1.17116 0.92972 0.92170 0.92614 1.20816 0.94634 1.07355 1.05802 1.17141 0.92386 0.91425 0.93196 1.91357 1.88931 1.67084 1.66332 1.20158 1.00056 0.98928 1.03485 1.19649 0.89060 0.98251 1.03867 1.98258 1.64006 1.57733 1.84247 1.17720 0.90123 0.94416 0.93465 1.42018 1.13926 1.36175 1.47826 0.89403 0.87345 0.84267 0.76677 0.77069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.39 13.93 21.83 0.30 -42.08 14 2 C 0.06 2.96 5.41 85.24 0.46 3.42 14 3 Si 0.95 41.43 24.52 68.60 1.68 43.11 14 4 H -0.27 -11.62 6.72 99.48 0.67 -10.95 14 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 14 6 H -0.26 -11.54 6.86 99.48 0.68 -10.86 14 7 C -0.46 -22.93 8.91 23.36 0.21 -22.72 14 8 H 0.08 4.19 7.03 -2.91 -0.02 4.17 14 9 C 0.06 2.70 5.11 -21.18 -0.11 2.59 14 10 C -0.26 -12.51 7.12 22.73 0.16 -12.35 14 11 C 0.08 3.50 7.28 22.34 0.16 3.66 14 12 F -0.16 -6.67 17.26 44.97 0.78 -5.90 14 13 C -0.21 -8.16 9.79 22.48 0.22 -7.94 14 14 C -0.07 -2.92 6.33 22.40 0.14 -2.77 14 15 Cl -0.07 -2.21 27.57 -2.72 -0.08 -2.29 14 16 C 0.15 6.26 6.79 38.97 0.26 6.52 14 17 N -0.86 -30.25 8.94 -50.30 -0.45 -30.70 14 18 H 0.30 13.63 8.30 -92.71 -0.77 12.86 14 19 H 0.11 5.22 4.77 -2.91 -0.01 5.21 14 20 H 0.14 4.83 8.06 -2.91 -0.02 4.81 14 21 H 0.40 14.14 7.13 -92.71 -0.66 13.48 14 22 H 0.40 11.93 7.48 -92.71 -0.69 11.24 14 Total: -1.00 -51.65 212.41 3.62 -48.03 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -0.13 Total: 19.42 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 1.51 Total: -29.58 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -0.15 Total: -72.78 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.78 Total: -5.90 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.68 Total: 43.11 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.08 Total: -2.29 kcal Total: -51.65 3.62 -48.03 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715846.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.574 kcal (2) G-P(sol) polarization free energy of solvation -51.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds