Wall clock time and date at job start Mon Mar 30 2020 03:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.47012 * 111.00124 * 2 1 4 4 C 1.53089 * 109.26013 * 177.60697 * 3 2 1 5 5 O 1.43024 * 109.25859 * 56.84965 * 4 3 2 6 6 C 1.43022 * 113.77162 * 301.35732 * 5 4 3 7 7 C 1.47010 * 110.99888 * 236.36641 * 2 1 3 8 8 H 1.09003 * 109.50738 * 62.41422 * 7 2 1 9 9 C 1.53003 * 109.50797 * 302.32873 * 7 2 1 10 10 N 1.46901 * 109.46929 * 305.17103 * 9 7 2 11 11 C 1.46897 * 110.99903 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.47414 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99061 * 0.02562 * 12 11 10 14 14 C 1.37866 * 120.00368 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00306 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99968 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46791 * 90.00109 * 16 14 12 18 18 H 1.48498 * 109.47187 * 209.99673 * 16 14 12 19 19 H 1.48495 * 109.47107 * 330.00247 * 16 14 12 20 20 H 1.08993 * 109.46961 * 189.64483 * 1 2 3 21 21 H 1.09001 * 109.46820 * 309.64427 * 1 2 3 22 22 H 1.08993 * 109.46892 * 69.64332 * 1 2 3 23 23 H 1.08996 * 109.50999 * 297.54842 * 3 2 1 24 24 H 1.09005 * 109.50189 * 57.67239 * 3 2 1 25 25 H 1.09001 * 109.50858 * 176.78500 * 4 3 2 26 26 H 1.09007 * 109.50799 * 296.91828 * 4 3 2 27 27 H 1.08999 * 109.47044 * 298.68176 * 6 5 4 28 28 H 1.09008 * 109.54129 * 178.55558 * 6 5 4 29 29 H 1.08999 * 109.46947 * 185.17092 * 9 7 2 30 30 H 1.08996 * 109.47350 * 65.17114 * 9 7 2 31 31 H 1.00903 * 110.99828 * 56.05052 * 10 9 7 32 32 H 1.08999 * 109.47127 * 299.99931 * 11 10 9 33 33 H 1.09002 * 109.47643 * 60.00137 * 11 10 9 34 34 H 0.96999 * 120.00447 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9960 1.3725 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0176 0.5574 -1.0404 6 6 3.5250 -0.7850 -1.0720 7 6 1.9959 -0.7602 -1.1427 8 1 1.6821 -0.2846 -2.0720 9 6 1.4590 -2.1921 -1.0950 10 7 1.7778 -2.7914 0.2078 11 6 1.2769 -4.1699 0.2898 12 6 1.6213 -4.7503 1.6373 13 1 2.1582 -4.1543 2.3605 14 6 1.2501 -6.0413 1.9472 15 7 1.5510 -6.5479 3.1228 16 14 0.3195 -7.0712 0.6969 17 1 1.2865 -7.8164 -0.1485 18 1 -0.5620 -8.0332 1.4059 19 1 -0.5055 -6.1828 -0.1604 20 1 -0.3633 -1.0131 0.1722 21 1 -0.3633 0.6557 0.7913 22 1 -0.3633 0.3575 -0.9634 23 1 1.6828 1.8826 -0.9109 24 1 1.6134 1.9091 0.8683 25 1 3.9222 2.3398 0.0030 26 1 3.8386 0.8643 0.9965 27 1 3.8392 -1.3087 -0.1693 28 1 3.9216 -1.2983 -1.9481 29 1 1.9209 -2.7799 -1.8882 30 1 0.3780 -2.1797 -1.2344 31 1 1.4151 -2.2290 0.9630 32 1 0.1947 -4.1716 0.1598 33 1 1.7379 -4.7713 -0.4937 34 1 1.2896 -7.4562 3.3410 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600759535.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:19 Heat of formation + Delta-G solvation = -33.851839 kcal Electronic energy + Delta-G solvation = -14951.405608 eV Core-core repulsion = 12498.480183 eV Total energy + Delta-G solvation = -2452.925425 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.66035 -36.27876 -34.73070 -32.57335 -31.06480 -28.84799 -27.36467 -24.87324 -24.02482 -22.21840 -21.14660 -19.57563 -16.80396 -16.34938 -16.10446 -15.44521 -15.02644 -14.77262 -14.32083 -14.03987 -13.67068 -13.23264 -12.59134 -12.35865 -12.33949 -12.05669 -11.68547 -11.53853 -11.21577 -10.89861 -10.64044 -10.42651 -10.28482 -9.82674 -9.48964 -9.24307 -8.56562 -8.28404 -7.37163 -6.03284 -4.00793 3.29707 3.36757 3.38875 3.83248 4.00484 4.43695 4.87247 4.94614 5.01877 5.21113 5.26154 5.29823 5.39601 5.50718 5.55220 5.57225 5.71912 5.86464 5.91529 5.93193 6.07102 6.11250 6.31570 6.80058 7.01944 7.03036 7.07950 7.29140 7.64549 7.94963 8.48053 8.69418 9.06116 9.59014 11.10124 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.045925 B = 0.006948 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.537813 B = 4028.980879 C = 4098.775833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.529 5.529 3 C 0.020 3.980 4 C 0.064 3.936 5 O -0.394 6.394 6 C 0.072 3.928 7 C 0.055 3.945 8 H 0.043 0.957 9 C 0.063 3.937 10 N -0.672 5.672 11 C 0.163 3.837 12 C -0.513 4.513 13 H 0.079 0.921 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.269 1.269 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.022 0.978 23 H 0.036 0.964 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.021 0.979 31 H 0.347 0.653 32 H -0.019 1.019 33 H 0.020 0.980 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 14.451 -8.424 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.255 5.255 3 C -0.108 4.108 4 C -0.013 4.013 5 O -0.312 6.312 6 C -0.004 4.004 7 C -0.054 4.054 8 H 0.061 0.939 9 C -0.068 4.068 10 N -0.304 5.304 11 C 0.035 3.965 12 C -0.551 4.551 13 H 0.097 0.903 14 C -0.134 4.134 15 N -0.540 5.540 16 Si 0.705 3.295 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.194 1.194 20 H 0.092 0.908 21 H 0.086 0.914 22 H 0.041 0.959 23 H 0.054 0.946 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.039 0.961 31 H 0.166 0.834 32 H -0.002 1.002 33 H 0.038 0.962 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.135 13.928 -8.206 16.167 hybrid contribution -2.085 -0.255 -1.064 2.354 sum -1.950 13.674 -9.270 16.634 Atomic orbital electron populations 1.22422 0.87266 1.02975 0.99856 1.62119 1.07805 1.12724 1.42834 1.22776 0.96811 0.90102 1.01114 1.22610 0.92008 0.96066 0.90631 1.87923 1.70144 1.24824 1.48345 1.22705 0.91146 0.82679 1.03906 1.22408 0.96908 0.94879 0.91196 0.93932 1.21910 0.97062 0.92449 0.95377 1.60401 1.63899 1.04166 1.01944 1.20002 0.92226 0.86138 0.98143 1.21068 1.36546 0.98772 0.98715 0.90252 1.24906 0.95683 0.97602 0.95187 1.69899 1.47278 1.15826 1.21025 0.86825 0.80367 0.80441 0.81854 1.20190 1.21280 1.19385 0.90776 0.91384 0.95926 0.94583 0.89849 0.89023 0.91943 0.89946 0.88874 0.91159 0.96131 0.83371 1.00182 0.96218 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.84 60.07 0.53 0.82 16 2 N -0.53 -7.43 3.91 -234.58 -0.92 -8.35 16 3 C 0.02 0.24 5.65 -3.72 -0.02 0.22 16 4 C 0.06 0.77 7.01 37.20 0.26 1.03 16 5 O -0.39 -5.77 10.83 -35.23 -0.38 -6.15 16 6 C 0.07 1.08 6.22 37.20 0.23 1.31 16 7 C 0.05 0.80 2.34 -67.60 -0.16 0.65 16 8 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 9 C 0.06 1.05 4.75 -3.82 -0.02 1.03 16 10 N -0.67 -13.91 5.89 -115.06 -0.68 -14.59 16 11 C 0.16 3.98 4.51 -4.97 -0.02 3.96 16 12 C -0.51 -14.82 9.87 -34.44 -0.34 -15.16 16 13 H 0.08 2.50 8.06 -52.48 -0.42 2.07 16 14 C 0.07 1.99 5.47 -17.83 -0.10 1.89 16 15 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 16 Si 0.88 21.76 27.47 -169.99 -4.67 17.10 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 20 H 0.07 1.06 6.40 -51.93 -0.33 0.73 16 21 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 22 H 0.02 0.26 8.12 -51.93 -0.42 -0.16 16 23 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.08 1.40 7.67 -51.93 -0.40 1.01 16 28 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.02 0.34 6.81 -51.93 -0.35 -0.01 16 31 H 0.35 7.28 7.37 -39.29 -0.29 6.99 16 32 H -0.02 -0.48 7.20 -51.93 -0.37 -0.85 16 33 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 269.97 15.07 4.07 4.07 Total: -1.00 -30.94 269.97 -6.96 -37.90 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.53 Total: 1.44 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 0.37 Total: -4.25 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.82 Total: -50.10 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.38 Total: -6.15 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.94 -6.96 -37.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600759535.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.050 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds