Wall clock time and date at job start Mon Mar 30 2020 03:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.47012 * 111.00124 * 2 1 4 4 C 1.53089 * 109.26013 * 177.60697 * 3 2 1 5 5 O 1.43024 * 109.25859 * 56.84965 * 4 3 2 6 6 C 1.43022 * 113.77162 * 301.35732 * 5 4 3 7 7 C 1.47010 * 110.99888 * 236.36641 * 2 1 3 8 8 H 1.09003 * 109.50738 * 62.41422 * 7 2 1 9 9 C 1.53003 * 109.50797 * 302.32873 * 7 2 1 10 10 N 1.46901 * 109.46929 * 305.17103 * 9 7 2 11 11 C 1.46897 * 110.99903 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.47414 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99061 * 0.02562 * 12 11 10 14 14 C 1.37866 * 120.00368 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00306 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99968 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46791 * 90.00109 * 16 14 12 18 18 H 1.48498 * 109.47187 * 209.99673 * 16 14 12 19 19 H 1.48495 * 109.47107 * 330.00247 * 16 14 12 20 20 H 1.08993 * 109.46961 * 189.64483 * 1 2 3 21 21 H 1.09001 * 109.46820 * 309.64427 * 1 2 3 22 22 H 1.08993 * 109.46892 * 69.64332 * 1 2 3 23 23 H 1.08996 * 109.50999 * 297.54842 * 3 2 1 24 24 H 1.09005 * 109.50189 * 57.67239 * 3 2 1 25 25 H 1.09001 * 109.50858 * 176.78500 * 4 3 2 26 26 H 1.09007 * 109.50799 * 296.91828 * 4 3 2 27 27 H 1.08999 * 109.47044 * 298.68176 * 6 5 4 28 28 H 1.09008 * 109.54129 * 178.55558 * 6 5 4 29 29 H 1.08999 * 109.46947 * 185.17092 * 9 7 2 30 30 H 1.08996 * 109.47350 * 65.17114 * 9 7 2 31 31 H 1.00903 * 110.99828 * 56.05052 * 10 9 7 32 32 H 1.08999 * 109.47127 * 299.99931 * 11 10 9 33 33 H 1.09002 * 109.47643 * 60.00137 * 11 10 9 34 34 H 0.96999 * 120.00447 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9960 1.3725 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0176 0.5574 -1.0404 6 6 3.5250 -0.7850 -1.0720 7 6 1.9959 -0.7602 -1.1427 8 1 1.6821 -0.2846 -2.0720 9 6 1.4590 -2.1921 -1.0950 10 7 1.7778 -2.7914 0.2078 11 6 1.2769 -4.1699 0.2898 12 6 1.6213 -4.7503 1.6373 13 1 2.1582 -4.1543 2.3605 14 6 1.2501 -6.0413 1.9472 15 7 1.5510 -6.5479 3.1228 16 14 0.3195 -7.0712 0.6969 17 1 1.2865 -7.8164 -0.1485 18 1 -0.5620 -8.0332 1.4059 19 1 -0.5055 -6.1828 -0.1604 20 1 -0.3633 -1.0131 0.1722 21 1 -0.3633 0.6557 0.7913 22 1 -0.3633 0.3575 -0.9634 23 1 1.6828 1.8826 -0.9109 24 1 1.6134 1.9091 0.8683 25 1 3.9222 2.3398 0.0030 26 1 3.8386 0.8643 0.9965 27 1 3.8392 -1.3087 -0.1693 28 1 3.9216 -1.2983 -1.9481 29 1 1.9209 -2.7799 -1.8882 30 1 0.3780 -2.1797 -1.2344 31 1 1.4151 -2.2290 0.9630 32 1 0.1947 -4.1716 0.1598 33 1 1.7379 -4.7713 -0.4937 34 1 1.2896 -7.4562 3.3410 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600759535.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:18 Heat of formation + Delta-G solvation = -58.313579 kcal Electronic energy + Delta-G solvation = -14952.466348 eV Core-core repulsion = 12498.480183 eV Total energy + Delta-G solvation = -2453.986165 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.76337 -37.59539 -36.16928 -34.55776 -32.51538 -29.96943 -29.07094 -26.33387 -25.08652 -23.41890 -23.06754 -20.75448 -18.92452 -17.51956 -17.22747 -16.88837 -16.29662 -15.94106 -15.80969 -15.61270 -15.00244 -14.72613 -14.40877 -13.78606 -13.62979 -13.29188 -13.08915 -12.81319 -12.63430 -12.50591 -12.07912 -11.89504 -11.80101 -11.52060 -11.37545 -10.80371 -10.59373 -9.31526 -9.03062 -8.28714 -6.33014 1.35348 1.36883 1.47826 2.34747 2.79507 2.96876 3.05332 3.53458 3.89920 3.98335 3.99874 4.25725 4.32554 4.37653 4.53645 4.59734 4.64852 4.70229 4.74663 4.84906 4.89336 4.94066 4.98730 5.08916 5.16380 5.54301 5.91992 6.03184 6.03939 6.21976 6.62767 6.70222 6.83156 7.32176 8.88240 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.045925 B = 0.006948 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.537813 B = 4028.980879 C = 4098.775833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.551 5.551 3 C 0.023 3.977 4 C 0.058 3.942 5 O -0.404 6.404 6 C 0.075 3.925 7 C 0.063 3.937 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.677 5.677 11 C 0.174 3.826 12 C -0.526 4.526 13 H 0.035 0.965 14 C 0.007 3.993 15 N -0.949 5.949 16 Si 0.953 3.047 17 H -0.265 1.265 18 H -0.281 1.281 19 H -0.251 1.251 20 H 0.054 0.946 21 H 0.082 0.918 22 H 0.035 0.965 23 H 0.045 0.955 24 H 0.101 0.899 25 H 0.121 0.879 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.028 0.972 31 H 0.343 0.657 32 H -0.017 1.017 33 H 0.024 0.976 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 15.287 -10.395 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.277 5.277 3 C -0.104 4.104 4 C -0.018 4.018 5 O -0.323 6.323 6 C -0.001 4.001 7 C -0.046 4.046 8 H 0.075 0.925 9 C -0.066 4.066 10 N -0.309 5.309 11 C 0.046 3.954 12 C -0.564 4.564 13 H 0.053 0.947 14 C -0.191 4.191 15 N -0.589 5.589 16 Si 0.776 3.224 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.175 1.175 20 H 0.072 0.928 21 H 0.101 0.899 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.119 0.881 25 H 0.139 0.861 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.162 0.838 32 H 0.001 0.999 33 H 0.042 0.958 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.853 14.798 -10.188 17.986 hybrid contribution -1.711 -0.411 -0.364 1.797 sum -2.564 14.386 -10.552 18.025 Atomic orbital electron populations 1.22387 0.86508 1.02175 1.01107 1.62094 1.08679 1.14183 1.42750 1.22819 0.96266 0.88997 1.02354 1.22830 0.92619 0.97005 0.89392 1.87910 1.70560 1.24550 1.49240 1.22609 0.91580 0.82958 1.02997 1.22267 0.96435 0.93682 0.92167 0.92467 1.21981 0.97729 0.93740 0.93133 1.60294 1.63960 1.02772 1.03885 1.19749 0.92237 0.88055 0.95381 1.21340 1.36081 0.98897 1.00075 0.94693 1.25893 0.96697 0.99047 0.97423 1.70058 1.48862 1.16560 1.23451 0.85629 0.79104 0.78558 0.79067 1.19049 1.20696 1.17489 0.92760 0.89931 0.94660 0.93676 0.88082 0.86132 0.93216 0.92808 0.87834 0.90448 0.95380 0.83776 0.99934 0.95796 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 8.84 127.69 1.13 1.74 16 2 N -0.55 -14.55 3.91 -896.09 -3.51 -18.05 16 3 C 0.02 0.49 5.65 86.31 0.49 0.98 16 4 C 0.06 1.30 7.01 72.01 0.50 1.81 16 5 O -0.40 -11.22 10.83 -148.98 -1.61 -12.83 16 6 C 0.08 2.18 6.22 72.01 0.45 2.63 16 7 C 0.06 1.74 2.34 44.93 0.11 1.85 16 8 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 9 C 0.06 2.05 4.75 86.30 0.41 2.46 16 10 N -0.68 -27.90 5.89 -517.93 -3.05 -30.95 16 11 C 0.17 8.42 4.51 85.56 0.39 8.81 16 12 C -0.53 -31.05 9.87 25.60 0.25 -30.79 16 13 H 0.03 2.30 8.06 -2.91 -0.02 2.28 16 14 C 0.01 0.39 5.47 84.65 0.46 0.86 16 15 N -0.95 -60.08 13.96 21.44 0.30 -59.78 16 16 Si 0.95 44.45 27.47 68.60 1.88 46.33 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 20 H 0.05 1.48 6.40 -2.39 -0.02 1.46 16 21 H 0.08 1.66 8.04 -2.39 -0.02 1.64 16 22 H 0.03 0.73 8.12 -2.39 -0.02 0.71 16 23 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.10 1.77 8.09 -2.38 -0.02 1.75 16 25 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.05 1.85 7.67 -2.39 -0.02 1.83 16 28 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 29 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.03 0.87 6.81 -2.39 -0.02 0.85 16 31 H 0.34 14.55 7.37 -89.69 -0.66 13.89 16 32 H -0.02 -0.81 7.20 -2.39 -0.02 -0.82 16 33 H 0.02 1.14 7.57 -2.39 -0.02 1.12 16 34 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -66.90 269.97 -1.45 -68.35 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.35 Total: 16.61 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 4.19 Total: -9.67 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -6.26 Total: -108.78 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -1.61 Total: -12.83 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -66.90 -1.45 -68.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600759535.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.034 kcal (2) G-P(sol) polarization free energy of solvation -66.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds