Wall clock time and date at job start Mon Mar 30 2020 02:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.46966 * 2 1 4 4 C 1.42906 * 114.00172 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47232 * 29.99319 * 4 3 2 6 6 C 1.53006 * 109.46748 * 269.99873 * 4 3 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.46991 * 60.00378 * 7 6 4 9 9 C 1.52996 * 109.47131 * 299.99311 * 8 7 6 10 10 O 1.42911 * 109.47245 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47292 * 299.99946 * 9 8 7 12 12 H 1.08005 * 119.99924 * 119.99568 * 11 9 8 13 13 C 1.37875 * 120.00332 * 299.99866 * 11 9 8 14 14 N 1.31513 * 119.99857 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99893 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47457 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46986 * 120.00507 * 15 13 11 18 18 H 1.48501 * 109.47104 * 240.00074 * 15 13 11 19 19 C 1.52997 * 109.47321 * 149.99974 * 4 3 2 20 20 H 1.08994 * 109.47033 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46828 * 299.99911 * 1 2 3 22 22 H 1.08992 * 109.47274 * 59.99932 * 1 2 3 23 23 H 1.08994 * 109.47195 * 240.00327 * 2 1 3 24 24 H 1.09001 * 109.47305 * 119.99791 * 2 1 3 25 25 H 1.08993 * 109.46955 * 299.99993 * 6 4 3 26 26 H 1.09000 * 109.47050 * 59.99822 * 6 4 3 27 27 H 1.09002 * 109.46719 * 180.02562 * 7 6 4 28 28 H 1.08993 * 109.47839 * 299.99931 * 7 6 4 29 29 H 1.09001 * 109.47289 * 179.97438 * 8 7 6 30 30 H 1.09000 * 109.47611 * 59.99933 * 8 7 6 31 31 H 0.96698 * 113.99178 * 59.99871 * 10 9 8 32 32 H 0.96997 * 119.99786 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.47153 * 299.99798 * 19 4 3 34 34 H 1.08996 * 109.46952 * 59.99969 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8632 0.6017 -0.5146 6 6 3.9398 1.5003 1.4418 7 6 5.4650 1.6206 1.4411 8 6 5.8749 2.9060 0.7198 9 6 5.3660 2.8659 -0.7225 10 8 5.7494 4.0664 -1.3965 11 6 5.9633 1.6789 -1.4331 12 1 5.3194 0.9149 -1.8433 13 6 7.3318 1.5680 -1.5597 14 7 8.1158 2.4979 -1.0597 15 14 8.0721 0.0961 -2.4400 16 1 6.9841 -0.8005 -2.9064 17 1 8.8623 0.5634 -3.6072 18 1 8.9585 -0.6445 -1.5067 19 6 3.8403 2.7459 -0.7218 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.5075 2.3587 1.9558 26 1 3.6481 0.5843 1.9556 27 1 5.8277 1.6487 2.4687 28 1 5.8971 0.7620 0.9272 29 1 6.9615 2.9920 0.7197 30 1 5.4430 3.7647 1.2338 31 1 6.7052 4.2076 -1.4350 32 1 9.0786 2.4197 -1.1484 33 1 3.4777 2.7173 -1.7493 34 1 3.4080 3.6043 -0.2077 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642848729.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:40 Heat of formation + Delta-G solvation = -121.598990 kcal Electronic energy + Delta-G solvation = -15463.014733 eV Core-core repulsion = 12973.991555 eV Total energy + Delta-G solvation = -2489.023178 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.70894 -36.65096 -33.69944 -32.08846 -31.02717 -29.10111 -27.76918 -25.10338 -22.58512 -21.42806 -20.90980 -18.82895 -16.66847 -16.10055 -15.24196 -15.10292 -14.62614 -13.94285 -13.28076 -13.26971 -12.97162 -12.64989 -12.09907 -11.97270 -11.57174 -11.46289 -11.19253 -11.05236 -10.89199 -10.56267 -10.41201 -10.09055 -10.05177 -9.66667 -9.51170 -9.11151 -8.82179 -8.54393 -7.94442 -6.15000 -4.24707 3.20760 3.30126 3.33524 4.13922 4.31750 5.10502 5.24991 5.39047 5.56283 5.62598 5.64844 5.80470 5.99381 6.08213 6.13885 6.23963 6.27601 6.46477 6.49022 6.56846 6.73981 6.76533 6.85576 6.96011 7.32944 7.36749 7.51024 7.67272 7.84566 8.03110 8.24201 8.76679 9.42501 9.58970 10.88077 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.031634 B = 0.010400 C = 0.009253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.907764 B = 2691.759562 C = 3025.482034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.392 6.392 4 C 0.100 3.900 5 H 0.070 0.930 6 C -0.132 4.132 7 C -0.100 4.100 8 C -0.137 4.137 9 C 0.252 3.748 10 O -0.594 6.594 11 C -0.527 4.527 12 H 0.059 0.941 13 C 0.069 3.931 14 N -0.898 5.898 15 Si 0.894 3.106 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.283 1.283 19 C -0.089 4.089 20 H 0.064 0.936 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.024 0.976 31 H 0.381 0.619 32 H 0.265 0.735 33 H 0.057 0.943 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.120 -4.231 3.481 8.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.312 6.312 4 C 0.043 3.957 5 H 0.088 0.912 6 C -0.169 4.169 7 C -0.137 4.137 8 C -0.175 4.175 9 C 0.212 3.788 10 O -0.403 6.403 11 C -0.565 4.565 12 H 0.077 0.923 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.127 4.127 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.043 0.957 31 H 0.232 0.768 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.705 -3.969 3.430 9.321 hybrid contribution 1.290 -1.163 -0.327 1.767 sum -6.415 -5.131 3.104 8.782 Atomic orbital electron populations 1.21729 0.94528 1.01567 1.02789 1.22386 0.94823 0.85065 0.99725 1.87855 1.22909 1.25293 1.95143 1.22080 0.78518 0.99666 0.95390 0.91163 1.21983 0.97646 1.00480 0.96839 1.21288 0.93222 1.00738 0.98473 1.22144 1.04050 0.94130 0.97203 1.18538 0.88137 0.83715 0.88368 1.86085 1.29576 1.44288 1.80382 1.21767 0.91760 1.07126 1.35837 0.92291 1.24976 0.97100 0.96354 0.94750 1.69593 1.04449 1.34096 1.45739 0.86511 0.79178 0.82623 0.79545 1.19773 1.20846 1.20929 1.21348 0.97243 0.94809 0.99277 0.91696 0.92185 0.92055 0.93715 0.93934 0.92469 0.93488 0.94125 0.91023 0.88809 0.95720 0.76836 0.92429 0.92394 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 37.16 0.38 -1.41 16 2 C 0.06 0.86 6.47 37.16 0.24 1.10 16 3 O -0.39 -7.41 9.99 -35.23 -0.35 -7.76 16 4 C 0.10 2.04 2.38 -26.73 -0.06 1.98 16 5 H 0.07 1.49 6.26 -51.93 -0.33 1.17 16 6 C -0.13 -2.51 5.54 -26.73 -0.15 -2.66 16 7 C -0.10 -2.07 5.70 -26.73 -0.15 -2.22 16 8 C -0.14 -3.23 4.86 -26.73 -0.13 -3.36 16 9 C 0.25 6.32 0.84 -91.75 -0.08 6.25 16 10 O -0.59 -15.91 12.96 -35.23 -0.46 -16.36 16 11 C -0.53 -13.84 6.29 -34.44 -0.22 -14.06 16 12 H 0.06 1.56 6.71 -52.48 -0.35 1.20 16 13 C 0.07 1.80 5.22 -17.82 -0.09 1.71 16 14 N -0.90 -23.68 9.68 55.43 0.54 -23.14 16 15 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 C -0.09 -2.04 4.72 -26.71 -0.13 -2.17 16 20 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 24 H 0.04 0.60 7.87 -51.93 -0.41 0.19 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.59 7.22 -51.93 -0.37 1.22 16 29 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.38 10.22 7.14 45.56 0.33 10.54 16 32 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 266.46 15.07 4.02 4.02 Total: -1.00 -27.22 266.46 -6.46 -33.68 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -4.80 Total: 8.95 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -0.38 Total: -14.84 kcal Atomic # 7 Polarization: -23.68 SS G_CDS: 0.54 Total: -23.14 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.81 Total: -24.13 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.22 -6.46 -33.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642848729.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.924 kcal (2) G-P(sol) polarization free energy of solvation -27.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds