Wall clock time and date at job start Mon Mar 30 2020 02:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.46966 * 2 1 4 4 C 1.42906 * 114.00172 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47232 * 29.99319 * 4 3 2 6 6 C 1.53006 * 109.46748 * 269.99873 * 4 3 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.46991 * 60.00378 * 7 6 4 9 9 C 1.52996 * 109.47131 * 299.99311 * 8 7 6 10 10 O 1.42911 * 109.47245 * 180.02562 * 9 8 7 11 11 C 1.50693 * 109.47292 * 299.99946 * 9 8 7 12 12 H 1.08005 * 119.99924 * 119.99568 * 11 9 8 13 13 C 1.37875 * 120.00332 * 299.99866 * 11 9 8 14 14 N 1.31513 * 119.99857 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99893 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47457 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46986 * 120.00507 * 15 13 11 18 18 H 1.48501 * 109.47104 * 240.00074 * 15 13 11 19 19 C 1.52997 * 109.47321 * 149.99974 * 4 3 2 20 20 H 1.08994 * 109.47033 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46828 * 299.99911 * 1 2 3 22 22 H 1.08992 * 109.47274 * 59.99932 * 1 2 3 23 23 H 1.08994 * 109.47195 * 240.00327 * 2 1 3 24 24 H 1.09001 * 109.47305 * 119.99791 * 2 1 3 25 25 H 1.08993 * 109.46955 * 299.99993 * 6 4 3 26 26 H 1.09000 * 109.47050 * 59.99822 * 6 4 3 27 27 H 1.09002 * 109.46719 * 180.02562 * 7 6 4 28 28 H 1.08993 * 109.47839 * 299.99931 * 7 6 4 29 29 H 1.09001 * 109.47289 * 179.97438 * 8 7 6 30 30 H 1.09000 * 109.47611 * 59.99933 * 8 7 6 31 31 H 0.96698 * 113.99178 * 59.99871 * 10 9 8 32 32 H 0.96997 * 119.99786 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.47153 * 299.99798 * 19 4 3 34 34 H 1.08996 * 109.46952 * 59.99969 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8632 0.6017 -0.5146 6 6 3.9398 1.5003 1.4418 7 6 5.4650 1.6206 1.4411 8 6 5.8749 2.9060 0.7198 9 6 5.3660 2.8659 -0.7225 10 8 5.7494 4.0664 -1.3965 11 6 5.9633 1.6789 -1.4331 12 1 5.3194 0.9149 -1.8433 13 6 7.3318 1.5680 -1.5597 14 7 8.1158 2.4979 -1.0597 15 14 8.0721 0.0961 -2.4400 16 1 6.9841 -0.8005 -2.9064 17 1 8.8623 0.5634 -3.6072 18 1 8.9585 -0.6445 -1.5067 19 6 3.8403 2.7459 -0.7218 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.5075 2.3587 1.9558 26 1 3.6481 0.5843 1.9556 27 1 5.8277 1.6487 2.4687 28 1 5.8971 0.7620 0.9272 29 1 6.9615 2.9920 0.7197 30 1 5.4430 3.7647 1.2338 31 1 6.7052 4.2076 -1.4350 32 1 9.0786 2.4197 -1.1484 33 1 3.4777 2.7173 -1.7493 34 1 3.4080 3.6043 -0.2077 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642848729.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:40 Heat of formation + Delta-G solvation = -139.288567 kcal Electronic energy + Delta-G solvation = -15463.781810 eV Core-core repulsion = 12973.991555 eV Total energy + Delta-G solvation = -2489.790255 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.38389 -38.30353 -35.49067 -34.11045 -32.29960 -30.84012 -29.46682 -27.07995 -23.75989 -23.14768 -22.60078 -20.67956 -18.56579 -17.67638 -17.12129 -16.54508 -16.25162 -15.73794 -15.02615 -14.88786 -14.46096 -14.38018 -13.53442 -13.51270 -13.33651 -13.01523 -12.78855 -12.58040 -12.38498 -12.35313 -12.28130 -11.81173 -11.71657 -11.42749 -11.24711 -10.93843 -10.54274 -10.36941 -9.92068 -8.13796 -6.30161 1.38731 1.43304 1.52296 2.40088 2.71949 3.11216 3.90289 3.97637 4.20913 4.31581 4.34977 4.38682 4.50200 4.55697 4.70436 4.80837 4.82910 4.91440 4.98169 5.02474 5.06529 5.13916 5.19210 5.31385 5.50701 5.57403 5.61621 5.73140 6.07263 6.24045 6.42484 6.73666 7.38451 7.50180 8.88065 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.031634 B = 0.010400 C = 0.009253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.907764 B = 2691.759562 C = 3025.482034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 O -0.405 6.405 4 C 0.110 3.890 5 H 0.059 0.941 6 C -0.124 4.124 7 C -0.094 4.094 8 C -0.132 4.132 9 C 0.238 3.762 10 O -0.608 6.608 11 C -0.541 4.541 12 H 0.051 0.949 13 C 0.031 3.969 14 N -0.913 5.913 15 Si 0.951 3.049 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.277 1.277 19 C -0.087 4.087 20 H 0.093 0.907 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.377 0.623 32 H 0.268 0.732 33 H 0.041 0.959 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.869 -5.648 4.246 10.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 O -0.326 6.326 4 C 0.053 3.947 5 H 0.077 0.923 6 C -0.162 4.162 7 C -0.132 4.132 8 C -0.170 4.170 9 C 0.199 3.801 10 O -0.417 6.417 11 C -0.579 4.579 12 H 0.070 0.930 13 C -0.168 4.168 14 N -0.554 5.554 15 Si 0.777 3.223 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.202 1.202 19 C -0.125 4.125 20 H 0.112 0.888 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.227 0.773 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.468 -5.390 4.201 10.882 hybrid contribution 1.494 -0.699 -0.588 1.751 sum -6.974 -6.089 3.613 9.938 Atomic orbital electron populations 1.21739 0.92150 1.03444 1.02725 1.22717 0.96773 0.83250 1.00354 1.87831 1.21567 1.27915 1.95252 1.21819 0.79660 0.97450 0.95811 0.92336 1.21908 0.96072 1.02113 0.96087 1.21216 0.94595 0.98310 0.99062 1.22025 1.02495 0.95878 0.96632 1.18818 0.89449 0.82782 0.89067 1.86079 1.29238 1.45365 1.80986 1.21859 0.92125 1.07415 1.36500 0.93042 1.25594 0.97378 0.98567 0.95290 1.69684 1.04646 1.35066 1.45960 0.85624 0.78329 0.79901 0.78474 1.19645 1.20883 1.20241 1.21311 0.95842 0.96520 0.98823 0.88850 0.91864 0.92521 0.93827 0.92574 0.91936 0.90729 0.91847 0.92645 0.91054 0.95467 0.77336 0.92240 0.94000 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 10.28 71.98 0.74 -2.33 16 2 C 0.05 1.26 6.47 71.98 0.47 1.73 16 3 O -0.41 -14.70 9.99 -148.98 -1.49 -16.19 16 4 C 0.11 4.36 2.38 30.60 0.07 4.44 16 5 H 0.06 2.45 6.26 -2.39 -0.01 2.44 16 6 C -0.12 -4.45 5.54 30.60 0.17 -4.28 16 7 C -0.09 -3.77 5.70 30.59 0.17 -3.60 16 8 C -0.13 -6.19 4.86 30.59 0.15 -6.05 16 9 C 0.24 12.05 0.84 -11.53 -0.01 12.04 16 10 O -0.61 -33.19 12.96 -148.98 -1.93 -35.12 16 11 C -0.54 -28.59 6.29 25.60 0.16 -28.43 16 12 H 0.05 2.74 6.71 -2.91 -0.02 2.72 16 13 C 0.03 1.63 5.22 84.65 0.44 2.07 16 14 N -0.91 -48.30 9.68 21.45 0.21 -48.09 16 15 Si 0.95 41.76 29.54 68.60 2.03 43.78 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 19 C -0.09 -4.02 4.72 30.61 0.14 -3.87 16 20 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 22 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.04 1.22 8.08 -2.39 -0.02 1.20 16 24 H 0.06 1.41 7.87 -2.39 -0.02 1.39 16 25 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.07 2.28 7.87 -2.39 -0.02 2.26 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.05 2.40 7.22 -2.39 -0.02 2.38 16 29 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.38 20.72 7.14 -74.06 -0.53 20.19 16 32 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 33 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -57.02 266.46 1.87 -55.15 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.54 Total: 28.74 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 2.51 Total: -28.28 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.21 Total: -48.09 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -3.42 Total: -51.31 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -57.02 1.87 -55.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642848729.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.135 kcal (2) G-P(sol) polarization free energy of solvation -57.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds