Wall clock time and date at job start Mon Mar 30 2020 02:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48501 * 109.47054 * 272.89773 * 3 2 1 5 5 H 1.48497 * 109.47324 * 32.90277 * 3 2 1 6 6 H 1.48501 * 109.46722 * 152.90053 * 3 2 1 7 7 C 1.38817 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00130 * 339.35621 * 7 2 1 9 9 N 1.36935 * 119.99782 * 159.36242 * 7 2 1 10 10 C 1.46925 * 120.62758 * 152.62208 * 9 7 2 11 11 C 1.53190 * 108.89356 * 126.30089 * 10 9 7 12 12 C 1.53352 * 109.15070 * 54.57285 * 11 10 9 13 13 N 1.46905 * 109.41726 * 178.67527 * 12 11 10 14 14 C 1.46902 * 111.00157 * 275.12721 * 13 12 11 15 15 C 1.53001 * 109.46907 * 180.02562 * 14 13 12 16 16 O 1.42894 * 109.46986 * 65.00135 * 15 14 13 17 17 C 1.53037 * 109.61060 * 298.71684 * 12 11 10 18 18 C 1.46926 * 120.63420 * 332.60348 * 9 7 2 19 19 H 0.96999 * 119.99917 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.58551 * 246.15355 * 10 9 7 21 21 H 1.08997 * 109.59252 * 6.43657 * 10 9 7 22 22 H 1.09004 * 109.50240 * 174.65815 * 11 10 9 23 23 H 1.09004 * 109.49453 * 294.75209 * 11 10 9 24 24 H 1.09008 * 109.41936 * 58.75652 * 12 11 10 25 25 H 1.00904 * 110.99458 * 151.17781 * 13 12 11 26 26 H 1.09000 * 109.47209 * 300.00683 * 14 13 12 27 27 H 1.09000 * 109.46737 * 60.00107 * 14 13 12 28 28 H 1.09000 * 109.46477 * 185.00007 * 15 14 13 29 29 H 1.08999 * 109.46893 * 305.00051 * 15 14 13 30 30 H 0.96694 * 113.99870 * 179.97438 * 16 15 14 31 31 H 1.09003 * 109.49698 * 301.42330 * 17 12 11 32 32 H 1.08994 * 109.52761 * 181.33744 * 17 12 11 33 33 H 1.09002 * 109.58248 * 353.41531 * 18 9 7 34 34 H 1.08994 * 109.58922 * 113.70036 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4363 2.0818 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5770 1.4232 0.6378 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4185 10 6 4.2349 -2.2633 0.0944 11 6 4.8749 -2.9934 -1.0905 12 6 5.5284 -1.9650 -2.0216 13 7 6.1715 -2.6615 -3.1438 14 6 7.5244 -3.1052 -2.7823 15 6 8.1607 -3.8240 -3.9737 16 8 8.3407 -2.8986 -5.0475 17 6 4.4619 -1.0081 -2.5592 18 6 3.8176 -0.2585 -1.3888 19 1 -0.4850 0.8400 -0.0004 20 1 5.0117 -1.7882 0.6936 21 1 3.6843 -2.9758 0.7086 22 1 5.6299 -3.6892 -0.7244 23 1 4.1079 -3.5424 -1.6367 24 1 6.2778 -1.3994 -1.4678 25 1 6.1900 -2.0793 -3.9678 26 1 8.1309 -2.2402 -2.5140 27 1 7.4685 -3.7870 -1.9337 28 1 9.1280 -4.2305 -3.6783 29 1 7.5095 -4.6354 -4.2985 30 1 8.7410 -3.2862 -5.8378 31 1 3.6989 -1.5759 -3.0917 32 1 4.9239 -0.2926 -3.2393 33 1 2.9910 0.3503 -1.7554 34 1 4.5584 0.3816 -0.9099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686195758.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:56 Heat of formation + Delta-G solvation = -29.730764 kcal Electronic energy + Delta-G solvation = -14888.393512 eV Core-core repulsion = 12435.646790 eV Total energy + Delta-G solvation = -2452.746721 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.42546 -37.11266 -34.92204 -32.23187 -30.60128 -30.20100 -27.71171 -24.33490 -22.97114 -21.68987 -21.30888 -19.26458 -17.72460 -16.76516 -15.70158 -15.35118 -14.87139 -14.44274 -14.05423 -13.69169 -13.52514 -13.16998 -12.58913 -12.37538 -12.08425 -11.85849 -11.69487 -11.13863 -10.86064 -10.72357 -10.36427 -10.22473 -10.10423 -9.86772 -9.63276 -9.36528 -8.58574 -8.20733 -6.92551 -5.90548 -3.25484 3.35091 3.50986 3.54467 4.13954 4.29170 4.57107 5.01344 5.03566 5.18646 5.21722 5.34752 5.45061 5.51306 5.74495 5.76810 5.82330 5.96404 6.15483 6.25972 6.33059 6.42020 6.48427 6.66890 6.70995 6.82502 7.04070 7.31415 7.44145 7.63716 8.01707 8.37788 8.99430 9.77129 10.15852 11.25674 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.056290 B = 0.007156 C = 0.006777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.309057 B = 3912.117859 C = 4130.564463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.257 4.257 8 H 0.086 0.914 9 N -0.605 5.605 10 C 0.147 3.853 11 C -0.119 4.119 12 C 0.094 3.906 13 N -0.685 5.685 14 C 0.059 3.941 15 C 0.076 3.924 16 O -0.576 6.576 17 C -0.134 4.134 18 C 0.128 3.872 19 H 0.262 0.738 20 H 0.019 0.981 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.345 0.655 26 H 0.032 0.968 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.377 0.623 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.843 -5.862 -6.919 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.713 3.287 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.197 1.197 7 C -0.386 4.386 8 H 0.103 0.897 9 N -0.329 5.329 10 C 0.021 3.979 11 C -0.158 4.158 12 C -0.015 4.015 13 N -0.317 5.317 14 C -0.071 4.071 15 C -0.002 4.002 16 O -0.381 6.381 17 C -0.173 4.173 18 C 0.002 3.998 19 H 0.072 0.928 20 H 0.037 0.963 21 H 0.082 0.918 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.053 0.947 25 H 0.163 0.837 26 H 0.050 0.950 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.224 0.776 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 15.119 -5.978 -6.301 17.436 hybrid contribution 1.216 1.413 -0.408 1.909 sum 16.335 -4.565 -6.709 18.240 Atomic orbital electron populations 1.69840 1.05704 1.26467 1.53272 1.25274 0.95220 0.97520 0.99631 0.86950 0.80000 0.84765 0.76968 1.21675 1.23171 1.19683 1.18946 0.85025 0.94743 1.39851 0.89684 1.44354 1.08673 1.33352 1.46552 1.20946 0.92290 0.91328 0.93339 1.22064 0.99278 0.97243 0.97263 1.21525 0.94892 0.93864 0.91235 1.60601 1.17654 1.46173 1.07319 1.22003 0.89651 0.99167 0.96244 1.22281 0.98273 0.91889 0.87718 1.86468 1.85557 1.39683 1.26373 1.22202 0.98207 0.97930 0.99002 1.21304 0.97158 0.92015 0.89308 0.92826 0.96347 0.91783 0.93173 0.91307 0.94668 0.83675 0.95001 0.89838 0.93623 0.92653 0.77597 0.90831 0.93120 0.90828 0.95964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.39 13.97 55.49 0.78 -27.61 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 22.91 24.34 -169.99 -4.14 18.78 16 4 H -0.29 -7.24 6.62 56.52 0.37 -6.87 16 5 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 6 H -0.27 -6.96 6.63 56.52 0.37 -6.58 16 7 C -0.26 -7.38 10.04 -15.06 -0.15 -7.53 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 N -0.61 -14.89 2.77 -172.32 -0.48 -15.36 16 10 C 0.15 3.02 6.50 -3.71 -0.02 2.99 16 11 C -0.12 -2.08 5.62 -26.45 -0.15 -2.23 16 12 C 0.09 1.58 2.46 -67.51 -0.17 1.42 16 13 N -0.69 -10.06 6.31 -106.50 -0.67 -10.73 16 14 C 0.06 0.72 5.90 -3.82 -0.02 0.70 16 15 C 0.08 0.75 7.39 37.16 0.27 1.03 16 16 O -0.58 -5.95 13.18 -35.23 -0.46 -6.42 16 17 C -0.13 -2.51 5.36 -26.61 -0.14 -2.66 16 18 C 0.13 2.91 4.21 -3.71 -0.02 2.90 16 19 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 20 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 21 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 22 H 0.05 0.76 7.43 -51.93 -0.39 0.38 16 23 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.04 0.60 7.80 -51.92 -0.40 0.20 16 25 H 0.34 5.08 7.89 -39.29 -0.31 4.77 16 26 H 0.03 0.41 8.05 -51.93 -0.42 -0.01 16 27 H 0.08 0.96 7.42 -51.93 -0.39 0.58 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.38 2.11 9.12 45.56 0.42 2.53 16 31 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.07 1.82 4.49 -51.93 -0.23 1.59 16 34 H 0.02 0.50 7.07 -51.93 -0.37 0.14 16 LS Contribution 266.02 15.07 4.01 4.01 Total: -1.00 -32.11 266.02 -6.10 -38.21 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.65 Total: 1.96 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.49 Total: -2.82 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.37 Total: -53.71 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.46 Total: -6.42 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.14 Total: 18.78 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.11 -6.10 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686195758.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.481 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds