Wall clock time and date at job start Mon Mar 30 2020 02:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48501 * 109.47054 * 272.89773 * 3 2 1 5 5 H 1.48497 * 109.47324 * 32.90277 * 3 2 1 6 6 H 1.48501 * 109.46722 * 152.90053 * 3 2 1 7 7 C 1.38817 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00130 * 339.35621 * 7 2 1 9 9 N 1.36935 * 119.99782 * 159.36242 * 7 2 1 10 10 C 1.46925 * 120.62758 * 152.62208 * 9 7 2 11 11 C 1.53190 * 108.89356 * 126.30089 * 10 9 7 12 12 C 1.53352 * 109.15070 * 54.57285 * 11 10 9 13 13 N 1.46905 * 109.41726 * 178.67527 * 12 11 10 14 14 C 1.46902 * 111.00157 * 275.12721 * 13 12 11 15 15 C 1.53001 * 109.46907 * 180.02562 * 14 13 12 16 16 O 1.42894 * 109.46986 * 65.00135 * 15 14 13 17 17 C 1.53037 * 109.61060 * 298.71684 * 12 11 10 18 18 C 1.46926 * 120.63420 * 332.60348 * 9 7 2 19 19 H 0.96999 * 119.99917 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.58551 * 246.15355 * 10 9 7 21 21 H 1.08997 * 109.59252 * 6.43657 * 10 9 7 22 22 H 1.09004 * 109.50240 * 174.65815 * 11 10 9 23 23 H 1.09004 * 109.49453 * 294.75209 * 11 10 9 24 24 H 1.09008 * 109.41936 * 58.75652 * 12 11 10 25 25 H 1.00904 * 110.99458 * 151.17781 * 13 12 11 26 26 H 1.09000 * 109.47209 * 300.00683 * 14 13 12 27 27 H 1.09000 * 109.46737 * 60.00107 * 14 13 12 28 28 H 1.09000 * 109.46477 * 185.00007 * 15 14 13 29 29 H 1.08999 * 109.46893 * 305.00051 * 15 14 13 30 30 H 0.96694 * 113.99870 * 179.97438 * 16 15 14 31 31 H 1.09003 * 109.49698 * 301.42330 * 17 12 11 32 32 H 1.08994 * 109.52761 * 181.33744 * 17 12 11 33 33 H 1.09002 * 109.58248 * 353.41531 * 18 9 7 34 34 H 1.08994 * 109.58922 * 113.70036 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4363 2.0818 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5770 1.4232 0.6378 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4185 10 6 4.2349 -2.2633 0.0944 11 6 4.8749 -2.9934 -1.0905 12 6 5.5284 -1.9650 -2.0216 13 7 6.1715 -2.6615 -3.1438 14 6 7.5244 -3.1052 -2.7823 15 6 8.1607 -3.8240 -3.9737 16 8 8.3407 -2.8986 -5.0475 17 6 4.4619 -1.0081 -2.5592 18 6 3.8176 -0.2585 -1.3888 19 1 -0.4850 0.8400 -0.0004 20 1 5.0117 -1.7882 0.6936 21 1 3.6843 -2.9758 0.7086 22 1 5.6299 -3.6892 -0.7244 23 1 4.1079 -3.5424 -1.6367 24 1 6.2778 -1.3994 -1.4678 25 1 6.1900 -2.0793 -3.9678 26 1 8.1309 -2.2402 -2.5140 27 1 7.4685 -3.7870 -1.9337 28 1 9.1280 -4.2305 -3.6783 29 1 7.5095 -4.6354 -4.2985 30 1 8.7410 -3.2862 -5.8378 31 1 3.6989 -1.5759 -3.0917 32 1 4.9239 -0.2926 -3.2393 33 1 2.9910 0.3503 -1.7554 34 1 4.5584 0.3816 -0.9099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686195758.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:55 Heat of formation + Delta-G solvation = -56.473511 kcal Electronic energy + Delta-G solvation = -14889.553164 eV Core-core repulsion = 12435.646790 eV Total energy + Delta-G solvation = -2453.906374 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.86474 -38.08897 -36.30843 -34.12461 -32.16740 -31.85599 -28.94357 -26.17132 -24.49361 -23.22543 -22.49694 -20.85984 -18.80805 -18.45279 -17.33943 -16.47815 -16.29997 -15.95799 -15.49980 -15.29523 -14.92826 -14.48808 -14.32405 -13.97963 -13.53588 -13.39971 -13.18728 -12.56320 -12.41415 -12.20169 -12.14716 -11.93020 -11.62499 -11.33319 -11.20501 -10.88843 -10.68814 -9.35402 -8.95174 -8.17245 -5.48776 1.28589 1.39572 1.49163 2.40872 3.04102 3.14196 3.38139 3.49728 3.86479 3.99266 4.25482 4.29359 4.38197 4.41413 4.50728 4.56670 4.68489 4.76307 4.80703 4.92708 4.98730 5.02876 5.05953 5.16253 5.25461 5.53696 5.86425 6.11177 6.14101 6.48841 6.91206 6.94956 7.61871 8.02916 9.02865 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.056290 B = 0.007156 C = 0.006777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.309057 B = 3912.117859 C = 4130.564463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.035 4.035 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.309 1.309 6 H -0.262 1.262 7 C -0.250 4.250 8 H 0.051 0.949 9 N -0.620 5.620 10 C 0.142 3.858 11 C -0.107 4.107 12 C 0.102 3.898 13 N -0.687 5.687 14 C 0.054 3.946 15 C 0.081 3.919 16 O -0.596 6.596 17 C -0.125 4.125 18 C 0.123 3.877 19 H 0.262 0.738 20 H 0.034 0.966 21 H 0.056 0.944 22 H 0.080 0.920 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.345 0.655 26 H 0.028 0.972 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.397 0.603 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.735 -5.887 -7.715 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.230 4.230 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.238 1.238 6 H -0.187 1.187 7 C -0.379 4.379 8 H 0.069 0.931 9 N -0.345 5.345 10 C 0.017 3.983 11 C -0.147 4.147 12 C -0.008 4.008 13 N -0.319 5.319 14 C -0.075 4.075 15 C 0.003 3.997 16 O -0.405 6.405 17 C -0.165 4.165 18 C -0.003 4.003 19 H 0.071 0.929 20 H 0.052 0.948 21 H 0.075 0.925 22 H 0.098 0.902 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.164 0.836 26 H 0.046 0.954 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.247 0.753 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 18.073 -6.029 -7.126 20.342 hybrid contribution 0.346 1.308 -0.182 1.365 sum 18.419 -4.721 -7.308 20.370 Atomic orbital electron populations 1.69969 1.07401 1.27227 1.55772 1.25903 0.95842 1.00944 1.00296 0.85893 0.78705 0.80228 0.77537 1.20161 1.23759 1.18675 1.18894 0.86865 0.93583 1.38603 0.93075 1.44494 1.07884 1.34660 1.47480 1.21133 0.91913 0.90545 0.94738 1.21906 0.99328 0.97409 0.96021 1.21347 0.94395 0.93264 0.91790 1.60547 1.19318 1.45559 1.06448 1.22154 0.88198 0.99361 0.97807 1.22233 0.99312 0.91280 0.86898 1.86409 1.85995 1.40587 1.27492 1.22057 0.98361 0.98424 0.97638 1.21356 0.96664 0.92013 0.90234 0.92925 0.94773 0.92497 0.90180 0.93178 0.94126 0.83585 0.95366 0.89024 0.91181 0.92604 0.75318 0.92483 0.90638 0.93191 0.94948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.48 13.97 21.65 0.30 -61.17 16 2 C -0.04 -2.11 5.23 84.86 0.44 -1.67 16 3 Si 0.95 47.64 24.34 68.60 1.67 49.31 16 4 H -0.27 -13.07 6.62 99.48 0.66 -12.41 16 5 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 6 H -0.26 -12.63 6.63 99.48 0.66 -11.97 16 7 C -0.25 -14.63 10.04 84.03 0.84 -13.78 16 8 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 9 N -0.62 -30.19 2.77 -699.10 -1.94 -32.13 16 10 C 0.14 5.61 6.50 86.36 0.56 6.18 16 11 C -0.11 -3.52 5.62 30.78 0.17 -3.35 16 12 C 0.10 3.14 2.46 45.04 0.11 3.25 16 13 N -0.69 -18.14 6.31 -490.87 -3.10 -21.24 16 14 C 0.05 1.14 5.90 86.30 0.51 1.65 16 15 C 0.08 1.31 7.39 71.98 0.53 1.84 16 16 O -0.60 -10.51 13.18 -148.98 -1.96 -12.48 16 17 C -0.13 -4.45 5.36 30.67 0.16 -4.29 16 18 C 0.12 5.37 4.21 86.36 0.36 5.74 16 19 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 20 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 22 H 0.08 2.17 7.43 -2.38 -0.02 2.15 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.04 1.24 7.80 -2.38 -0.02 1.22 16 25 H 0.35 9.18 7.89 -89.69 -0.71 8.47 16 26 H 0.03 0.63 8.05 -2.39 -0.02 0.61 16 27 H 0.09 1.77 7.42 -2.39 -0.02 1.75 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.40 3.26 9.12 -74.06 -0.68 2.59 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 2.30 8.10 -2.39 -0.02 2.29 16 33 H 0.05 2.41 4.49 -2.39 -0.01 2.40 16 34 H 0.03 1.37 7.07 -2.39 -0.02 1.35 16 Total: -1.00 -69.33 266.02 -1.71 -71.04 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -0.39 Total: 11.10 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 3.70 Total: -4.44 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -4.73 Total: -114.54 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -1.96 Total: -12.48 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.67 Total: 49.31 kcal Total: -69.33 -1.71 -71.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686195758.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.568 kcal (2) G-P(sol) polarization free energy of solvation -69.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds