Wall clock time and date at job start Mon Mar 30 2020 02:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00348 * 2 1 4 4 H 1.48500 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47273 * 300.00601 * 3 2 1 6 6 H 1.48497 * 109.46798 * 60.00722 * 3 2 1 7 7 C 1.37878 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00121 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47091 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00148 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47392 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46860 * 65.00424 * 12 11 10 14 14 N 1.45404 * 110.99936 * 173.70702 * 13 12 11 15 15 C 1.48533 * 110.99828 * 8.54401 * 14 13 12 16 16 C 1.54941 * 103.22710 * 159.71759 * 15 14 13 17 17 C 1.54594 * 102.92115 * 322.58180 * 16 15 14 18 18 C 1.47913 * 110.99717 * 125.93370 * 14 13 12 19 19 H 0.97010 * 119.99664 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.46938 * 60.00275 * 9 7 2 21 21 H 1.09001 * 109.46667 * 300.00168 * 9 7 2 22 22 H 1.09004 * 109.46811 * 59.99599 * 11 10 9 23 23 H 1.09002 * 109.47083 * 300.00288 * 11 10 9 24 24 H 1.09002 * 109.47485 * 305.00277 * 12 11 10 25 25 H 1.09002 * 109.47438 * 184.99986 * 12 11 10 26 26 H 1.00900 * 111.00192 * 297.66078 * 13 12 11 27 27 H 1.09001 * 110.66722 * 278.14778 * 15 14 13 28 28 H 1.08999 * 110.66953 * 41.28382 * 15 14 13 29 29 H 1.09001 * 110.72739 * 204.22710 * 16 15 14 30 30 H 1.08997 * 110.72432 * 80.94155 * 16 15 14 31 31 H 1.08994 * 110.31152 * 263.04143 * 17 16 15 32 32 H 1.09006 * 110.30773 * 140.87046 * 17 16 15 33 33 H 1.08995 * 109.91560 * 333.51423 * 18 14 13 34 34 H 1.09003 * 109.91378 * 94.60831 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6478 -5.9562 -0.0006 13 7 3.4087 -5.8877 1.2541 14 7 4.3492 -6.9921 1.3540 15 6 4.4170 -7.7506 0.0788 16 6 5.7735 -8.4925 0.1792 17 6 6.6842 -7.4552 0.8755 18 6 5.7212 -6.4989 1.6032 19 1 -0.4850 0.8402 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5570 0.8897 22 1 0.9444 -4.9827 -0.8897 23 1 0.9450 -4.9822 0.8903 24 1 3.3208 -5.7958 -0.8429 25 1 2.1817 -6.9375 -0.0898 26 1 3.8817 -5.0009 1.3422 27 1 3.5938 -8.4617 0.0099 28 1 4.4124 -7.0712 -0.7736 29 1 6.1545 -8.7359 -0.8126 30 1 5.6773 -9.3915 0.7880 31 1 7.2713 -6.9106 0.1362 32 1 7.3406 -7.9488 1.5922 33 1 5.8305 -5.4894 1.2071 34 1 5.9283 -6.5021 2.6734 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686774078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:52 Heat of formation + Delta-G solvation = -14.370005 kcal Electronic energy + Delta-G solvation = -14332.750461 eV Core-core repulsion = 11880.669832 eV Total energy + Delta-G solvation = -2452.080629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.13270 -36.84493 -34.15190 -32.66809 -30.18382 -28.98777 -27.26807 -25.98852 -22.67510 -22.22265 -21.12704 -19.94683 -16.86988 -16.49344 -16.36448 -15.54178 -15.16326 -14.47947 -14.31153 -13.84731 -13.60976 -12.98466 -12.86465 -12.29529 -11.91889 -11.80715 -11.48143 -11.28608 -11.23612 -10.82045 -10.81740 -10.75638 -10.60768 -10.07628 -9.45967 -9.11707 -8.86281 -8.20188 -7.89607 -6.12722 -4.14668 3.27651 3.34092 3.39985 3.57504 4.19812 4.33506 4.55074 4.75557 4.87428 4.98847 5.07336 5.23913 5.29708 5.41972 5.50237 5.60677 5.62414 5.67883 5.80068 5.87077 5.93660 6.00689 6.13677 6.26128 6.40923 7.08999 7.29737 7.42330 7.75120 7.76693 8.12773 8.53899 8.98040 9.50260 10.98834 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.047781 B = 0.005430 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.870992 B = 5155.150331 C = 5561.200225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.197 3.803 10 O -0.402 6.402 11 C 0.066 3.934 12 C 0.036 3.964 13 N -0.502 5.502 14 N -0.321 5.321 15 C -0.011 4.011 16 C -0.123 4.123 17 C -0.132 4.132 18 C 0.000 4.000 19 H 0.264 0.736 20 H 0.005 0.995 21 H 0.008 0.992 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.039 0.961 25 H 0.087 0.913 26 H 0.340 0.660 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.503 -14.438 -0.219 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.123 3.877 10 O -0.322 6.322 11 C -0.013 4.013 12 C -0.094 4.094 13 N -0.225 5.225 14 N -0.135 5.135 15 C -0.140 4.140 16 C -0.162 4.162 17 C -0.170 4.170 18 C -0.130 4.130 19 H 0.073 0.927 20 H 0.022 0.978 21 H 0.025 0.975 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.105 0.895 26 H 0.160 0.840 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.859 -14.903 0.606 17.348 hybrid contribution 0.981 1.768 -1.415 2.467 sum 9.839 -13.135 -0.809 16.432 Atomic orbital electron populations 1.69974 1.06105 1.27077 1.50492 1.24947 0.94973 0.99433 0.95114 0.86288 0.79950 0.82623 0.77662 1.19560 1.20844 1.20759 1.21078 0.93988 0.89405 1.50889 0.91651 1.20194 0.88687 0.83352 0.95495 1.87778 1.35946 1.13174 1.95284 1.22240 0.94205 0.84917 0.99943 1.22541 0.96370 0.99202 0.91294 1.65537 1.19954 1.03123 1.33839 1.70023 1.03641 1.12811 1.27009 1.23963 0.98588 0.98095 0.93370 1.22496 0.94429 0.98558 1.00692 1.22433 0.97961 0.97076 0.99574 1.23580 0.89621 0.97649 1.02144 0.92670 0.97754 0.97459 0.93777 0.93111 0.94331 0.89501 0.84015 0.89308 0.92334 0.91040 0.90577 0.91507 0.90820 0.92852 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.23 9.43 -34.44 -0.32 -15.55 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.20 5.44 5.69 36.01 0.20 5.65 16 10 O -0.40 -9.66 9.96 -35.23 -0.35 -10.01 16 11 C 0.07 1.25 6.28 37.15 0.23 1.48 16 12 C 0.04 0.57 4.97 -3.83 -0.02 0.55 16 13 N -0.50 -8.23 7.50 -10.37 -0.08 -8.31 16 14 N -0.32 -4.50 6.19 -110.08 -0.68 -5.18 16 15 C -0.01 -0.13 5.24 -1.90 -0.01 -0.14 16 16 C -0.12 -1.15 7.06 -24.87 -0.18 -1.32 16 17 C -0.13 -1.26 6.93 -25.38 -0.18 -1.44 16 18 C 0.00 0.00 6.81 -2.75 -0.02 -0.02 16 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 20 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 21 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.04 0.60 6.48 -51.93 -0.34 0.27 16 25 H 0.09 1.19 7.06 -51.93 -0.37 0.82 16 26 H 0.34 5.95 7.42 -174.65 -1.30 4.66 16 27 H 0.09 0.98 7.64 -51.93 -0.40 0.58 16 28 H 0.06 0.72 5.89 -51.93 -0.31 0.41 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.68 7.42 -51.93 -0.39 0.30 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 276.98 15.07 4.17 4.17 Total: -1.00 -31.10 276.98 -8.04 -39.14 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.44 Total: -1.17 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.38 Total: -9.26 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.02 Total: -39.73 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.35 Total: -10.01 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.10 -8.04 -39.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686774078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.775 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds