Wall clock time and date at job start Mon Mar 30 2020 02:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00348 * 2 1 4 4 H 1.48500 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47273 * 300.00601 * 3 2 1 6 6 H 1.48497 * 109.46798 * 60.00722 * 3 2 1 7 7 C 1.37878 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00121 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47091 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00148 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47392 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46860 * 65.00424 * 12 11 10 14 14 N 1.45404 * 110.99936 * 173.70702 * 13 12 11 15 15 C 1.48533 * 110.99828 * 8.54401 * 14 13 12 16 16 C 1.54941 * 103.22710 * 159.71759 * 15 14 13 17 17 C 1.54594 * 102.92115 * 322.58180 * 16 15 14 18 18 C 1.47913 * 110.99717 * 125.93370 * 14 13 12 19 19 H 0.97010 * 119.99664 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.46938 * 60.00275 * 9 7 2 21 21 H 1.09001 * 109.46667 * 300.00168 * 9 7 2 22 22 H 1.09004 * 109.46811 * 59.99599 * 11 10 9 23 23 H 1.09002 * 109.47083 * 300.00288 * 11 10 9 24 24 H 1.09002 * 109.47485 * 305.00277 * 12 11 10 25 25 H 1.09002 * 109.47438 * 184.99986 * 12 11 10 26 26 H 1.00900 * 111.00192 * 297.66078 * 13 12 11 27 27 H 1.09001 * 110.66722 * 278.14778 * 15 14 13 28 28 H 1.08999 * 110.66953 * 41.28382 * 15 14 13 29 29 H 1.09001 * 110.72739 * 204.22710 * 16 15 14 30 30 H 1.08997 * 110.72432 * 80.94155 * 16 15 14 31 31 H 1.08994 * 110.31152 * 263.04143 * 17 16 15 32 32 H 1.09006 * 110.30773 * 140.87046 * 17 16 15 33 33 H 1.08995 * 109.91560 * 333.51423 * 18 14 13 34 34 H 1.09003 * 109.91378 * 94.60831 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6478 -5.9562 -0.0006 13 7 3.4087 -5.8877 1.2541 14 7 4.3492 -6.9921 1.3540 15 6 4.4170 -7.7506 0.0788 16 6 5.7735 -8.4925 0.1792 17 6 6.6842 -7.4552 0.8755 18 6 5.7212 -6.4989 1.6032 19 1 -0.4850 0.8402 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5570 0.8897 22 1 0.9444 -4.9827 -0.8897 23 1 0.9450 -4.9822 0.8903 24 1 3.3208 -5.7958 -0.8429 25 1 2.1817 -6.9375 -0.0898 26 1 3.8817 -5.0009 1.3422 27 1 3.5938 -8.4617 0.0099 28 1 4.4124 -7.0712 -0.7736 29 1 6.1545 -8.7359 -0.8126 30 1 5.6773 -9.3915 0.7880 31 1 7.2713 -6.9106 0.1362 32 1 7.3406 -7.9488 1.5922 33 1 5.8305 -5.4894 1.2071 34 1 5.9283 -6.5021 2.6734 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686774078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:52 Heat of formation + Delta-G solvation = -37.002158 kcal Electronic energy + Delta-G solvation = -14333.731865 eV Core-core repulsion = 11880.669832 eV Total energy + Delta-G solvation = -2453.062033 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.17913 -38.61478 -35.50248 -34.72415 -31.44613 -30.00625 -29.18220 -27.35082 -24.59082 -23.72738 -22.04721 -21.03913 -18.66835 -17.95538 -17.68713 -17.12305 -16.54756 -16.38432 -15.84024 -15.25364 -14.72429 -14.42521 -14.04720 -13.61009 -13.59486 -13.08117 -12.93252 -12.70966 -12.60801 -12.45977 -12.27403 -12.12153 -11.89044 -11.49891 -11.29830 -10.91369 -10.61800 -10.28209 -9.04792 -8.34332 -6.47089 1.38788 1.40368 1.54655 2.32687 2.44663 2.99719 3.07094 3.31253 3.73082 3.88938 4.00530 4.07568 4.15633 4.28488 4.47160 4.52600 4.63132 4.68101 4.76879 4.81412 4.86262 4.89511 4.94790 5.11442 5.13269 5.16544 5.40705 5.51873 5.92660 6.11008 6.48049 6.55654 6.77277 7.24866 8.78302 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.047781 B = 0.005430 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.870992 B = 5155.150331 C = 5561.200225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.211 3.789 10 O -0.411 6.411 11 C 0.058 3.942 12 C 0.049 3.951 13 N -0.519 5.519 14 N -0.332 5.332 15 C -0.016 4.016 16 C -0.116 4.116 17 C -0.127 4.127 18 C -0.005 4.005 19 H 0.271 0.729 20 H -0.012 1.012 21 H -0.014 1.014 22 H 0.056 0.944 23 H 0.046 0.954 24 H 0.040 0.960 25 H 0.112 0.888 26 H 0.328 0.672 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.879 -14.866 -0.532 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.079 0.921 9 C 0.136 3.864 10 O -0.331 6.331 11 C -0.020 4.020 12 C -0.081 4.081 13 N -0.241 5.241 14 N -0.146 5.146 15 C -0.145 4.145 16 C -0.155 4.155 17 C -0.166 4.166 18 C -0.134 4.134 19 H 0.080 0.920 20 H 0.005 0.995 21 H 0.004 0.996 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.130 0.870 26 H 0.146 0.854 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.233 -15.365 0.291 18.463 hybrid contribution 0.532 1.785 -1.298 2.270 sum 10.765 -13.580 -1.008 17.358 Atomic orbital electron populations 1.70078 1.07785 1.28647 1.50408 1.25965 0.95957 1.03403 0.93840 0.85122 0.78592 0.77272 0.78319 1.18871 1.19583 1.19630 1.21400 0.94040 0.90828 1.52380 0.92072 1.19819 0.88568 0.84488 0.93557 1.87743 1.35712 1.14379 1.95274 1.22536 0.95680 0.83479 1.00281 1.22466 0.95463 0.98800 0.91357 1.65537 1.21250 1.03202 1.34093 1.69899 1.04308 1.11802 1.28589 1.24068 1.00505 0.97999 0.91923 1.22511 0.92735 0.98336 1.01913 1.22441 0.97609 0.96651 0.99884 1.23651 0.89359 0.97762 1.02664 0.91985 0.99460 0.99645 0.92574 0.93575 0.94165 0.86984 0.85369 0.88579 0.92966 0.89197 0.89719 0.90925 0.89115 0.94098 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 2 C 0.01 0.40 5.46 84.66 0.46 0.87 16 3 Si 0.98 44.53 29.54 68.60 2.03 46.56 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -32.98 9.43 25.60 0.24 -32.74 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 9 C 0.21 12.02 5.69 71.24 0.41 12.42 16 10 O -0.41 -20.22 9.96 -148.98 -1.48 -21.71 16 11 C 0.06 2.23 6.28 71.98 0.45 2.69 16 12 C 0.05 1.51 4.97 86.30 0.43 1.94 16 13 N -0.52 -16.97 7.50 -186.72 -1.40 -18.37 16 14 N -0.33 -8.98 6.19 -502.17 -3.11 -12.09 16 15 C -0.02 -0.35 5.24 86.65 0.45 0.10 16 16 C -0.12 -1.85 7.06 31.80 0.22 -1.62 16 17 C -0.13 -2.14 6.93 31.47 0.22 -1.92 16 18 C 0.00 -0.12 6.81 86.44 0.59 0.47 16 19 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 20 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 21 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 22 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.04 1.23 6.48 -2.39 -0.02 1.21 16 25 H 0.11 2.88 7.06 -2.39 -0.02 2.86 16 26 H 0.33 11.73 7.42 -204.85 -1.52 10.21 16 27 H 0.10 1.90 7.64 -2.39 -0.02 1.88 16 28 H 0.05 1.20 5.89 -2.39 -0.01 1.18 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.04 1.05 7.42 -2.39 -0.02 1.03 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -66.51 276.98 -0.66 -67.17 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -0.45 Total: 12.24 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 3.48 Total: -17.80 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -4.23 Total: -86.46 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -1.48 Total: -21.71 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.51 -0.66 -67.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686774078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.163 kcal (2) G-P(sol) polarization free energy of solvation -66.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds