Wall clock time and date at job start Mon Mar 30 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09010 * 109.47013 * 2 1 4 4 C 1.52994 * 109.47410 * 120.00040 * 2 1 3 5 5 C 1.50704 * 109.47550 * 185.00309 * 4 2 1 6 6 H 1.07997 * 119.99597 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00252 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00024 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99907 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47113 * 90.00151 * 9 7 5 11 11 H 1.48502 * 109.47202 * 210.00024 * 9 7 5 12 12 H 1.48501 * 109.47321 * 330.00070 * 9 7 5 13 13 O 1.42899 * 109.47142 * 240.00360 * 2 1 3 14 14 C 1.42899 * 114.00402 * 89.99794 * 13 2 1 15 15 C 1.52998 * 109.47334 * 179.97438 * 14 13 2 16 16 H 1.09008 * 111.01940 * 50.77990 * 15 14 13 17 17 C 1.55305 * 111.12605 * 174.99851 * 15 14 13 18 18 C 1.54387 * 102.24962 * 152.05537 * 17 15 14 19 19 O 1.43236 * 107.59079 * 338.64624 * 18 17 15 20 20 C 1.43643 * 109.97149 * 358.28683 * 19 18 17 21 21 H 1.09002 * 109.47618 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47478 * 299.99862 * 1 2 3 23 23 H 1.09008 * 109.47428 * 60.00132 * 1 2 3 24 24 H 1.09004 * 109.46853 * 305.00188 * 4 2 1 25 25 H 1.09000 * 109.47169 * 64.99643 * 4 2 1 26 26 H 0.97008 * 119.99708 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.46916 * 60.00362 * 14 13 2 28 28 H 1.09000 * 109.47108 * 300.00050 * 14 13 2 29 29 H 1.08998 * 110.84418 * 33.87024 * 17 15 14 30 30 H 1.09003 * 110.84733 * 270.24434 * 17 15 14 31 31 H 1.09001 * 109.82619 * 98.16119 * 18 17 15 32 32 H 1.09004 * 109.82781 * 219.03947 * 18 17 15 33 33 H 1.08997 * 110.30752 * 143.34329 * 20 19 18 34 34 H 1.08998 * 110.31231 * 265.51386 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3577 8 7 5.5411 -1.1010 2.4129 9 14 3.3015 -2.1087 3.6953 10 1 3.1700 -3.5386 3.3168 11 1 4.0453 -2.0021 4.9761 12 1 1.9508 -1.5129 3.8562 13 8 2.0062 -0.6736 -1.1668 14 6 2.2000 0.1830 -2.2941 15 6 2.7090 -0.6405 -3.4789 16 1 2.0791 -1.5141 -3.6472 17 6 2.8139 0.2293 -4.7612 18 6 3.9422 -0.4761 -5.5441 19 8 4.7088 -1.2393 -4.6052 20 6 4.1900 -1.0500 -3.2792 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.6053 -0.2617 2.1369 25 1 1.7516 -1.7715 1.2056 26 1 6.0255 -1.5078 3.1483 27 1 2.9319 0.9514 -2.0450 28 1 1.2537 0.6547 -2.5589 29 1 3.0949 1.2529 -4.5136 30 1 1.8797 0.2072 -5.3225 31 1 3.5125 -1.1383 -6.2957 32 1 4.5781 0.2666 -6.0259 33 1 4.2525 -1.9789 -2.7124 34 1 4.7363 -0.2569 -2.7688 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695817383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:46 Heat of formation + Delta-G solvation = -109.195677 kcal Electronic energy + Delta-G solvation = -14711.991536 eV Core-core repulsion = 12223.506207 eV Total energy + Delta-G solvation = -2488.485330 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.32342 -37.53689 -33.63175 -32.45943 -31.17672 -29.23638 -27.89347 -25.26737 -22.82564 -22.12687 -20.65934 -19.92591 -16.77852 -16.69933 -15.99192 -15.71181 -14.95556 -14.43812 -14.20522 -13.38779 -13.34628 -12.89016 -12.65951 -12.27392 -12.01539 -11.76358 -11.62079 -11.45697 -11.01795 -10.95688 -10.66052 -10.55102 -10.19386 -9.79029 -9.69236 -9.33732 -9.17722 -8.74384 -8.49016 -5.98567 -3.95130 3.34368 3.41178 3.43347 3.95684 4.26004 4.49282 4.61034 4.93046 5.04394 5.30583 5.37804 5.38699 5.53009 5.63106 5.68156 5.75213 5.79477 5.82596 5.90434 5.96886 6.07125 6.21972 6.31885 6.38862 6.56786 6.70475 7.14873 7.16752 7.23770 7.80353 8.04281 8.59124 9.06493 9.63273 11.15045 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032708 B = 0.007880 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.844854 B = 3552.603631 C = 4213.643521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.052 0.948 4 C -0.013 4.013 5 C -0.508 4.508 6 H 0.072 0.928 7 C 0.065 3.935 8 N -0.904 5.904 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.267 1.267 13 O -0.366 6.366 14 C 0.074 3.926 15 C -0.118 4.118 16 H 0.092 0.908 17 C -0.150 4.150 18 C 0.053 3.947 19 O -0.389 6.389 20 C 0.060 3.940 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.043 0.957 24 H 0.029 0.971 25 H 0.021 0.979 26 H 0.262 0.738 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.105 3.126 -11.705 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.043 3.957 3 H 0.070 0.930 4 C -0.050 4.050 5 C -0.546 4.546 6 H 0.090 0.910 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.192 1.192 13 O -0.285 6.285 14 C -0.003 4.003 15 C -0.137 4.137 16 H 0.110 0.890 17 C -0.188 4.188 18 C -0.024 4.024 19 O -0.309 6.309 20 C -0.015 4.015 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.047 0.953 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.737 2.752 -11.647 14.251 hybrid contribution -0.652 -0.061 0.817 1.047 sum -8.390 2.691 -10.831 13.962 Atomic orbital electron populations 1.22364 0.98085 1.01942 1.00802 1.22117 0.90788 0.96237 0.86574 0.92958 1.19727 0.97888 0.96087 0.91336 1.21012 0.89522 1.34893 1.09163 0.90991 1.25002 0.94727 0.95958 0.97881 1.69914 1.06467 1.45660 1.32322 0.86810 0.80318 0.80723 0.81583 1.20299 1.21472 1.19172 1.87984 1.86688 1.34369 1.19467 1.22252 0.98481 0.92836 0.86723 1.22802 0.98040 0.99215 0.93631 0.89012 1.23117 0.99535 1.00027 0.96109 1.23040 0.92391 0.94477 0.92494 1.88395 1.56033 1.69280 1.17193 1.23476 0.91591 1.02911 0.83571 0.92361 0.92138 0.93772 0.95341 0.96115 0.92842 0.93302 0.94115 0.90385 0.90081 0.91658 0.91764 0.88630 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.53 37.15 0.35 -2.48 16 2 C 0.10 2.03 2.66 -26.74 -0.07 1.95 16 3 H 0.05 1.04 7.79 -51.92 -0.40 0.64 16 4 C -0.01 -0.32 3.75 -27.88 -0.10 -0.42 16 5 C -0.51 -14.60 9.43 -34.44 -0.32 -14.93 16 6 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 9 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 O -0.37 -7.44 9.71 -35.23 -0.34 -7.79 16 14 C 0.07 1.19 5.21 37.16 0.19 1.39 16 15 C -0.12 -1.71 3.35 -88.37 -0.30 -2.01 16 16 H 0.09 1.32 8.14 -51.92 -0.42 0.90 16 17 C -0.15 -1.68 6.50 -24.78 -0.16 -1.85 16 18 C 0.05 0.64 7.79 37.88 0.30 0.93 16 19 O -0.39 -6.34 11.36 -35.23 -0.40 -6.74 16 20 C 0.06 1.01 7.24 38.19 0.28 1.29 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.04 0.62 7.87 -51.92 -0.41 0.21 16 24 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 25 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.05 0.80 7.89 -51.93 -0.41 0.40 16 28 H 0.04 0.57 7.87 -51.93 -0.41 0.16 16 29 H 0.08 0.82 8.03 -51.93 -0.42 0.41 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.07 1.17 7.89 -51.93 -0.41 0.76 16 LS Contribution 279.59 15.07 4.21 4.21 Total: -1.00 -31.63 279.59 -6.13 -37.76 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -5.77 Total: -3.03 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 0.06 Total: -14.30 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 0.77 Total: -27.43 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.74 Total: -14.53 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.63 -6.13 -37.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.432 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds