Wall clock time and date at job start Mon Mar 30 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09010 * 109.47013 * 2 1 4 4 C 1.52994 * 109.47410 * 120.00040 * 2 1 3 5 5 C 1.50704 * 109.47550 * 185.00309 * 4 2 1 6 6 H 1.07997 * 119.99597 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00252 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00024 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99907 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47113 * 90.00151 * 9 7 5 11 11 H 1.48502 * 109.47202 * 210.00024 * 9 7 5 12 12 H 1.48501 * 109.47321 * 330.00070 * 9 7 5 13 13 O 1.42899 * 109.47142 * 240.00360 * 2 1 3 14 14 C 1.42899 * 114.00402 * 89.99794 * 13 2 1 15 15 C 1.52998 * 109.47334 * 179.97438 * 14 13 2 16 16 H 1.09008 * 111.01940 * 50.77990 * 15 14 13 17 17 C 1.55305 * 111.12605 * 174.99851 * 15 14 13 18 18 C 1.54387 * 102.24962 * 152.05537 * 17 15 14 19 19 O 1.43236 * 107.59079 * 338.64624 * 18 17 15 20 20 C 1.43643 * 109.97149 * 358.28683 * 19 18 17 21 21 H 1.09002 * 109.47618 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47478 * 299.99862 * 1 2 3 23 23 H 1.09008 * 109.47428 * 60.00132 * 1 2 3 24 24 H 1.09004 * 109.46853 * 305.00188 * 4 2 1 25 25 H 1.09000 * 109.47169 * 64.99643 * 4 2 1 26 26 H 0.97008 * 119.99708 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.46916 * 60.00362 * 14 13 2 28 28 H 1.09000 * 109.47108 * 300.00050 * 14 13 2 29 29 H 1.08998 * 110.84418 * 33.87024 * 17 15 14 30 30 H 1.09003 * 110.84733 * 270.24434 * 17 15 14 31 31 H 1.09001 * 109.82619 * 98.16119 * 18 17 15 32 32 H 1.09004 * 109.82781 * 219.03947 * 18 17 15 33 33 H 1.08997 * 110.30752 * 143.34329 * 20 19 18 34 34 H 1.08998 * 110.31231 * 265.51386 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3577 8 7 5.5411 -1.1010 2.4129 9 14 3.3015 -2.1087 3.6953 10 1 3.1700 -3.5386 3.3168 11 1 4.0453 -2.0021 4.9761 12 1 1.9508 -1.5129 3.8562 13 8 2.0062 -0.6736 -1.1668 14 6 2.2000 0.1830 -2.2941 15 6 2.7090 -0.6405 -3.4789 16 1 2.0791 -1.5141 -3.6472 17 6 2.8139 0.2293 -4.7612 18 6 3.9422 -0.4761 -5.5441 19 8 4.7088 -1.2393 -4.6052 20 6 4.1900 -1.0500 -3.2792 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.6053 -0.2617 2.1369 25 1 1.7516 -1.7715 1.2056 26 1 6.0255 -1.5078 3.1483 27 1 2.9319 0.9514 -2.0450 28 1 1.2537 0.6547 -2.5589 29 1 3.0949 1.2529 -4.5136 30 1 1.8797 0.2072 -5.3225 31 1 3.5125 -1.1383 -6.2957 32 1 4.5781 0.2666 -6.0259 33 1 4.2525 -1.9789 -2.7124 34 1 4.7363 -0.2569 -2.7688 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695817383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:46 Heat of formation + Delta-G solvation = -130.941789 kcal Electronic energy + Delta-G solvation = -14712.934519 eV Core-core repulsion = 12223.506207 eV Total energy + Delta-G solvation = -2489.428312 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.52297 -39.01516 -35.39316 -34.15153 -32.75462 -30.39210 -29.67116 -26.61441 -24.70318 -23.19991 -22.02530 -21.44320 -18.89841 -18.02077 -17.38127 -16.99506 -16.39537 -16.18174 -15.57599 -14.95694 -14.58277 -14.50059 -14.10552 -13.98244 -13.57569 -13.35061 -12.93542 -12.62415 -12.51613 -12.34780 -12.13508 -11.80669 -11.72145 -11.69111 -11.42303 -11.24260 -10.74493 -10.53174 -10.24245 -8.25657 -6.28047 1.36514 1.38107 1.49389 2.37888 2.70847 3.01708 3.13133 3.50128 3.81972 3.95042 4.15699 4.22326 4.30368 4.35468 4.45534 4.53667 4.56567 4.62144 4.79169 4.87865 4.88459 4.90804 5.02341 5.07697 5.19247 5.22929 5.32134 5.42503 5.68099 6.00820 6.29639 6.56401 6.78291 7.34248 8.91451 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032708 B = 0.007880 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.844854 B = 3552.603631 C = 4213.643521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 H 0.047 0.953 4 C -0.014 4.014 5 C -0.515 4.515 6 H 0.028 0.972 7 C -0.001 4.001 8 N -0.954 5.954 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.241 1.241 13 O -0.396 6.396 14 C 0.072 3.928 15 C -0.114 4.114 16 H 0.095 0.905 17 C -0.136 4.136 18 C 0.041 3.959 19 O -0.412 6.412 20 C 0.059 3.941 21 H 0.058 0.942 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.041 0.959 25 H 0.018 0.982 26 H 0.264 0.736 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.931 3.376 -12.308 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.065 0.935 4 C -0.051 4.051 5 C -0.553 4.553 6 H 0.046 0.954 7 C -0.197 4.197 8 N -0.596 5.596 9 Si 0.774 3.226 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.164 1.164 13 O -0.316 6.316 14 C -0.005 4.005 15 C -0.132 4.132 16 H 0.114 0.886 17 C -0.174 4.174 18 C -0.034 4.034 19 O -0.333 6.333 20 C -0.017 4.017 21 H 0.077 0.923 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.059 0.941 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.585 3.020 -12.273 16.486 hybrid contribution 0.332 -0.096 0.887 0.951 sum -10.254 2.924 -11.387 15.599 Atomic orbital electron populations 1.22238 0.94255 1.02671 1.02865 1.22039 0.93639 0.95020 0.85211 0.93532 1.19720 0.94551 0.96627 0.94252 1.21325 0.92245 1.33912 1.07842 0.95364 1.26022 0.95622 0.97123 1.00885 1.70084 1.08565 1.47322 1.33602 0.85659 0.79900 0.79198 0.77869 1.19779 1.20988 1.16411 1.87929 1.87184 1.35940 1.20519 1.22439 0.99783 0.92421 0.85810 1.22786 0.95750 0.99985 0.94728 0.88645 1.23116 1.00721 0.99425 0.94108 1.23375 0.92828 0.95154 0.92082 1.88363 1.57291 1.70367 1.17241 1.23300 0.93659 1.00801 0.83951 0.92264 0.90668 0.91167 0.94109 0.96335 0.92714 0.94652 0.90779 0.89647 0.86795 0.89603 0.90163 0.91406 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.75 9.53 71.98 0.69 -4.06 16 2 C 0.10 3.87 2.66 30.59 0.08 3.95 16 3 H 0.05 1.84 7.79 -2.38 -0.02 1.82 16 4 C -0.01 -0.68 3.75 29.85 0.11 -0.57 16 5 C -0.52 -30.51 9.43 25.60 0.24 -30.27 16 6 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 7 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 8 N -0.95 -61.63 13.96 21.44 0.30 -61.33 16 9 Si 0.95 45.25 27.47 68.60 1.88 47.13 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 13 O -0.40 -16.03 9.71 -148.98 -1.45 -17.48 16 14 C 0.07 2.25 5.21 71.98 0.38 2.62 16 15 C -0.11 -3.19 3.35 -9.34 -0.03 -3.22 16 16 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 17 C -0.14 -2.68 6.50 31.86 0.21 -2.47 16 18 C 0.04 0.92 7.79 72.45 0.56 1.48 16 19 O -0.41 -13.55 11.36 -148.98 -1.69 -15.24 16 20 C 0.06 2.09 7.24 72.65 0.53 2.61 16 21 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 23 H 0.07 1.68 7.87 -2.38 -0.02 1.67 16 24 H 0.04 1.84 7.20 -2.39 -0.02 1.82 16 25 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 26 H 0.26 15.92 8.31 -92.70 -0.77 15.15 16 27 H 0.04 1.18 7.89 -2.39 -0.02 1.16 16 28 H 0.07 1.82 7.87 -2.39 -0.02 1.80 16 29 H 0.08 1.57 8.03 -2.39 -0.02 1.55 16 30 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.05 1.73 7.89 -2.39 -0.02 1.72 16 Total: -1.00 -71.03 279.59 3.26 -67.78 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.99 Total: 8.65 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 3.22 Total: -29.51 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: 0.30 Total: -61.33 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -3.14 Total: -32.71 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.13 kcal Total: -71.03 3.26 -67.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.166 kcal (2) G-P(sol) polarization free energy of solvation -71.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds