Wall clock time and date at job start Mon Mar 30 2020 02:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 H 1.08000 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00373 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99985 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47320 * 89.99850 * 9 7 5 11 11 H 1.48505 * 109.47486 * 209.99782 * 9 7 5 12 12 H 1.48495 * 109.47140 * 329.99955 * 9 7 5 13 13 O 1.42906 * 109.47321 * 119.99798 * 2 1 3 14 14 C 1.42900 * 113.99734 * 270.00521 * 13 2 1 15 15 C 1.53007 * 109.46862 * 179.97438 * 14 13 2 16 16 H 1.09000 * 110.45775 * 52.39005 * 15 14 13 17 17 C 1.54504 * 110.51089 * 174.99845 * 15 14 13 18 18 C 1.54483 * 104.06266 * 118.64144 * 17 15 14 19 19 O 1.44424 * 104.80220 * 23.98227 * 18 17 15 20 20 C 1.44429 * 105.27153 * 319.48341 * 19 18 17 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 25 25 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 26 26 H 0.96998 * 120.00442 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.47044 * 299.99435 * 14 13 2 28 28 H 1.08995 * 109.47735 * 59.99930 * 14 13 2 29 29 H 1.09004 * 110.50970 * 237.28870 * 17 15 14 30 30 H 1.08996 * 110.51224 * 359.97438 * 17 15 14 31 31 H 1.09004 * 110.36877 * 142.80654 * 18 17 15 32 32 H 1.08992 * 110.37212 * 265.03039 * 18 17 15 33 33 H 1.09000 * 110.37387 * 281.68055 * 20 19 18 34 34 H 1.08998 * 110.36889 * 159.34891 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 5.5412 -1.1011 -2.4128 9 14 3.3016 -2.1087 -3.6952 10 1 2.9409 -1.1639 -4.7826 11 1 4.1600 -3.1896 -4.2431 12 1 2.0655 -2.7004 -3.1232 13 8 2.0064 -0.6736 1.1668 14 6 2.2000 0.1830 2.2941 15 6 2.7079 -0.6407 3.4793 16 1 3.5808 -1.2261 3.1902 17 6 3.0446 0.2798 4.6736 18 6 2.0900 -0.1928 5.7925 19 8 1.7688 -1.5588 5.4510 20 6 1.5897 -1.5605 4.0178 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.7517 -1.7715 -1.2055 25 1 1.6055 -0.2617 -2.1369 26 1 6.0257 -1.5085 -3.1478 27 1 2.9319 0.9514 2.0450 28 1 1.2538 0.6547 2.5589 29 1 4.0833 0.1478 4.9766 30 1 2.8497 1.3217 4.4197 31 1 2.5898 -0.1512 6.7603 32 1 1.1882 0.4191 5.8055 33 1 0.6102 -1.1597 3.7573 34 1 1.7051 -2.5696 3.6223 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695817385.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:51 Heat of formation + Delta-G solvation = -130.764830 kcal Electronic energy + Delta-G solvation = -14666.339255 eV Core-core repulsion = 12176.918617 eV Total energy + Delta-G solvation = -2489.420638 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53284 -38.98254 -35.39156 -34.13397 -32.73329 -30.24083 -29.69043 -26.48760 -24.74447 -23.60492 -21.92491 -21.23006 -18.92190 -18.04845 -17.11832 -16.81300 -16.52022 -16.28139 -15.69448 -15.22506 -14.62155 -14.32384 -13.93060 -13.76551 -13.57569 -13.24421 -13.17349 -12.62054 -12.43910 -12.27411 -12.14953 -11.94856 -11.73981 -11.50441 -11.39639 -11.20240 -10.77075 -10.75452 -10.25492 -8.26648 -6.29081 1.35391 1.38783 1.50477 2.37784 2.77940 3.06632 3.12902 3.65695 3.82222 3.95827 4.14217 4.20609 4.32604 4.35223 4.40296 4.53127 4.56626 4.68886 4.79641 4.86189 4.88418 4.94185 5.06266 5.06558 5.15831 5.20110 5.30764 5.42547 5.67539 5.82795 6.28735 6.56300 6.77328 7.33300 8.90643 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040998 B = 0.006844 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.788174 B = 4090.312631 C = 4385.936986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 H 0.046 0.954 4 C -0.014 4.014 5 C -0.516 4.516 6 H 0.027 0.973 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.951 3.049 10 H -0.261 1.261 11 H -0.286 1.286 12 H -0.248 1.248 13 O -0.395 6.395 14 C 0.072 3.928 15 C -0.123 4.123 16 H 0.066 0.934 17 C -0.144 4.144 18 C 0.043 3.957 19 O -0.401 6.401 20 C 0.059 3.941 21 H 0.058 0.942 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.020 0.980 25 H 0.040 0.960 26 H 0.265 0.735 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.988 3.622 11.978 16.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.064 0.936 4 C -0.051 4.051 5 C -0.554 4.554 6 H 0.045 0.955 7 C -0.197 4.197 8 N -0.597 5.597 9 Si 0.775 3.225 10 H -0.186 1.186 11 H -0.212 1.212 12 H -0.172 1.172 13 O -0.315 6.315 14 C -0.005 4.005 15 C -0.142 4.142 16 H 0.085 0.915 17 C -0.182 4.182 18 C -0.033 4.033 19 O -0.320 6.320 20 C -0.017 4.017 21 H 0.077 0.923 22 H 0.094 0.906 23 H 0.087 0.913 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.836 3.202 12.035 16.508 hybrid contribution 0.484 -0.011 -0.959 1.074 sum -10.352 3.191 11.077 15.493 Atomic orbital electron populations 1.22244 0.94294 1.02665 1.02865 1.22034 0.93609 0.95001 0.85271 0.93551 1.19711 0.94501 0.96778 0.94151 1.21329 0.92291 1.33938 1.07870 0.95474 1.26033 0.95647 0.97065 1.00922 1.70076 1.08593 1.47320 1.33661 0.85644 0.79238 0.78721 0.78944 1.18617 1.21230 1.17195 1.87930 1.87177 1.35949 1.20469 1.22584 0.99442 0.92511 0.85942 1.22491 0.99285 0.97697 0.94737 0.91548 1.22942 1.01384 1.00287 0.93543 1.23612 0.98282 0.82414 0.99038 1.89082 1.91425 1.28971 1.22518 1.23389 0.97574 1.00632 0.80118 0.92272 0.90556 0.91287 0.96177 0.94218 0.92665 0.94410 0.91478 0.89982 0.88691 0.87308 0.90657 0.91065 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.80 9.53 71.98 0.69 -4.12 16 2 C 0.10 3.89 2.67 30.59 0.08 3.97 16 3 H 0.05 1.84 7.79 -2.39 -0.02 1.82 16 4 C -0.01 -0.68 3.75 29.85 0.11 -0.56 16 5 C -0.52 -30.62 9.43 25.60 0.24 -30.38 16 6 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 7 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 8 N -0.96 -61.46 13.96 21.45 0.30 -61.16 16 9 Si 0.95 45.09 27.47 68.60 1.88 46.97 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 12 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 13 O -0.40 -16.14 9.66 -148.98 -1.44 -17.58 16 14 C 0.07 2.28 4.89 71.98 0.35 2.63 16 15 C -0.12 -3.57 3.39 -9.78 -0.03 -3.61 16 16 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 17 C -0.14 -3.09 6.74 31.61 0.21 -2.88 16 18 C 0.04 0.83 7.63 72.49 0.55 1.39 16 19 O -0.40 -10.88 11.65 -148.98 -1.74 -12.62 16 20 C 0.06 1.63 7.10 72.48 0.51 2.15 16 21 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.07 1.69 7.87 -2.38 -0.02 1.67 16 24 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 25 H 0.04 1.77 7.57 -2.39 -0.02 1.75 16 26 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 27 H 0.04 1.26 8.08 -2.39 -0.02 1.24 16 28 H 0.07 1.73 7.69 -2.39 -0.02 1.71 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.72 7.73 -2.39 -0.02 1.70 16 31 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.78 7.74 -2.39 -0.02 1.76 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -70.17 279.05 3.18 -66.99 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.99 Total: 8.40 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 3.18 Total: -31.00 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.30 Total: -61.16 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -3.17 Total: -30.20 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -70.17 3.18 -66.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817385.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.778 kcal (2) G-P(sol) polarization free energy of solvation -70.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds