Wall clock time and date at job start Mon Mar 30 2020 02:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.50707 * 109.47009 * 184.99986 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99791 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00085 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47123 * 89.99841 * 9 7 5 11 11 H 1.48501 * 109.47190 * 209.99451 * 9 7 5 12 12 H 1.48491 * 109.47113 * 329.99424 * 9 7 5 13 13 O 1.42895 * 109.47036 * 239.99631 * 2 1 3 14 14 C 1.42902 * 113.99750 * 90.00531 * 13 2 1 15 15 C 1.53183 * 109.54165 * 269.82098 * 14 13 2 16 16 C 1.53103 * 109.15668 * 183.24265 * 15 14 13 17 17 O 1.42907 * 109.48985 * 57.47123 * 16 15 14 18 18 C 1.42903 * 114.09904 * 298.89343 * 17 16 15 19 19 C 1.53089 * 109.41501 * 61.15071 * 18 17 16 20 20 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 23 23 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 24 24 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 25 25 H 0.97003 * 120.00323 * 180.02562 * 8 7 5 26 26 H 1.08994 * 109.54566 * 29.99491 * 14 13 2 27 27 H 1.08997 * 109.52326 * 303.05791 * 15 14 13 28 28 H 1.09001 * 109.52274 * 63.24739 * 15 14 13 29 29 H 1.09001 * 109.40789 * 297.49095 * 16 15 14 30 30 H 1.09001 * 109.49261 * 177.50980 * 16 15 14 31 31 H 1.09005 * 109.47738 * 301.17255 * 18 17 16 32 32 H 1.09000 * 109.48827 * 181.14257 * 18 17 16 33 33 H 1.09008 * 109.52162 * 182.48565 * 19 18 17 34 34 H 1.08999 * 109.57217 * 62.33167 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3129 6 1 4.0790 -0.0862 0.5393 7 6 4.2304 -1.1935 2.3579 8 7 3.5764 -1.8377 3.2996 9 14 6.0920 -1.0611 2.4370 10 1 6.4697 0.1611 3.1913 11 1 6.6446 -2.2566 3.1230 12 1 6.6416 -0.9825 1.0598 13 8 2.0064 -0.6737 -1.1667 14 6 2.2002 0.1829 -2.2940 15 6 0.9100 0.2460 -3.1174 16 6 1.1515 1.1000 -4.3650 17 8 2.2324 0.5475 -5.1190 18 6 3.4753 0.5087 -4.4148 19 6 3.3278 -0.3708 -3.1704 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.6053 -0.2617 2.1370 24 1 1.7516 -1.7715 1.2057 25 1 4.0607 -2.2445 4.0351 26 1 2.4629 1.1835 -1.9508 27 1 0.6198 -0.7609 -3.4174 28 1 0.1164 0.6913 -2.5175 29 1 1.4007 2.1177 -4.0646 30 1 0.2499 1.1123 -4.9774 31 1 3.7549 1.5187 -4.1150 32 1 4.2478 0.0949 -5.0630 33 1 4.2618 -0.3662 -2.6083 34 1 3.0884 -1.3909 -3.4706 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695821033.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:30 Heat of formation + Delta-G solvation = -113.440349 kcal Electronic energy + Delta-G solvation = -14954.623147 eV Core-core repulsion = 12465.953755 eV Total energy + Delta-G solvation = -2488.669392 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.40253 -37.27905 -33.56388 -32.18682 -31.09460 -30.52692 -27.37146 -24.29970 -23.45578 -22.97527 -20.38138 -19.88469 -16.70058 -16.27870 -15.96730 -15.58318 -14.77666 -14.62086 -14.34734 -13.89551 -13.04917 -12.81595 -12.55900 -12.15328 -11.78967 -11.71902 -11.30226 -11.18063 -11.10397 -10.91581 -10.68147 -10.48461 -10.10264 -9.97914 -9.64882 -9.32818 -9.12633 -8.61274 -8.33495 -5.96137 -3.96487 3.33624 3.39948 3.43724 3.87903 4.29762 4.49252 4.91557 5.03091 5.07503 5.27713 5.33053 5.40266 5.53084 5.59904 5.67067 5.73170 5.81797 5.97261 6.03216 6.12644 6.15593 6.32087 6.41467 6.46774 6.75511 6.94148 7.20041 7.55322 7.68078 8.01427 8.20659 8.46261 9.07424 9.65687 11.15645 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035000 B = 0.008158 C = 0.006820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.800604 B = 3431.195411 C = 4104.327726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 H 0.045 0.955 4 C 0.023 3.977 5 C -0.506 4.506 6 H 0.054 0.946 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 O -0.357 6.357 14 C 0.090 3.910 15 C -0.182 4.182 16 C 0.064 3.936 17 O -0.387 6.387 18 C 0.065 3.935 19 C -0.154 4.154 20 H 0.044 0.956 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.029 0.971 24 H 0.025 0.975 25 H 0.260 0.740 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 5.991 -12.564 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.034 3.966 3 H 0.063 0.937 4 C -0.014 4.014 5 C -0.545 4.545 6 H 0.072 0.928 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 O -0.276 6.276 14 C 0.031 3.969 15 C -0.220 4.220 16 C -0.013 4.013 17 O -0.306 6.306 18 C -0.012 4.012 19 C -0.191 4.191 20 H 0.063 0.937 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.644 5.621 -12.586 14.258 hybrid contribution 0.938 0.346 0.537 1.135 sum -2.706 5.967 -12.049 13.716 Atomic orbital electron populations 1.22497 0.98246 1.01955 1.00575 1.22474 0.91022 0.95865 0.87266 0.93651 1.19251 0.96280 0.96379 0.89485 1.21127 0.91916 1.33919 1.07502 0.92766 1.24995 0.98293 0.95468 0.95837 1.69956 1.35432 1.36287 1.12176 0.86606 0.85962 0.77437 0.78073 1.20806 1.21249 1.19915 1.88048 1.86134 1.34247 1.19151 1.21986 0.93215 0.94020 0.87686 1.22942 0.99723 1.02022 0.97311 1.22553 0.90181 0.95636 0.92920 1.87888 1.18289 1.83819 1.40558 1.22589 0.86182 0.98876 0.93554 1.22267 0.99835 1.01008 0.96032 0.93711 0.92361 0.92321 0.95255 0.95635 0.93068 0.92788 0.90454 0.90465 0.93411 0.89039 0.93248 0.88647 0.89885 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 9.33 37.16 0.35 -2.74 16 2 C 0.09 1.94 2.67 -26.73 -0.07 1.87 16 3 H 0.05 0.94 7.37 -51.93 -0.38 0.56 16 4 C 0.02 0.60 4.68 -27.88 -0.13 0.47 16 5 C -0.51 -14.54 8.88 -34.44 -0.31 -14.84 16 6 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 9 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 O -0.36 -7.58 9.42 -35.23 -0.33 -7.92 16 14 C 0.09 1.50 2.69 -26.55 -0.07 1.43 16 15 C -0.18 -2.55 5.50 -26.58 -0.15 -2.70 16 16 C 0.06 0.77 6.84 37.21 0.25 1.02 16 17 O -0.39 -5.32 10.77 -35.23 -0.38 -5.70 16 18 C 0.06 0.82 6.84 37.20 0.25 1.07 16 19 C -0.15 -2.36 5.79 -26.60 -0.15 -2.51 16 20 H 0.04 0.67 5.55 -51.93 -0.29 0.38 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.05 0.89 7.37 -51.93 -0.38 0.51 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.08 1.02 5.64 -51.93 -0.29 0.73 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 274.56 15.07 4.14 4.14 Total: -1.00 -31.22 274.56 -6.52 -37.74 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.54 Total: -3.20 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -0.12 Total: -15.43 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.74 Total: -26.61 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.71 Total: -13.62 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.22 -6.52 -37.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695821033.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.701 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds