Wall clock time and date at job start Mon Mar 30 2020 02:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.50707 * 109.47009 * 184.99986 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99791 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00085 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47123 * 89.99841 * 9 7 5 11 11 H 1.48501 * 109.47190 * 209.99451 * 9 7 5 12 12 H 1.48491 * 109.47113 * 329.99424 * 9 7 5 13 13 O 1.42895 * 109.47036 * 239.99631 * 2 1 3 14 14 C 1.42902 * 113.99750 * 90.00531 * 13 2 1 15 15 C 1.53183 * 109.54165 * 269.82098 * 14 13 2 16 16 C 1.53103 * 109.15668 * 183.24265 * 15 14 13 17 17 O 1.42907 * 109.48985 * 57.47123 * 16 15 14 18 18 C 1.42903 * 114.09904 * 298.89343 * 17 16 15 19 19 C 1.53089 * 109.41501 * 61.15071 * 18 17 16 20 20 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 23 23 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 24 24 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 25 25 H 0.97003 * 120.00323 * 180.02562 * 8 7 5 26 26 H 1.08994 * 109.54566 * 29.99491 * 14 13 2 27 27 H 1.08997 * 109.52326 * 303.05791 * 15 14 13 28 28 H 1.09001 * 109.52274 * 63.24739 * 15 14 13 29 29 H 1.09001 * 109.40789 * 297.49095 * 16 15 14 30 30 H 1.09001 * 109.49261 * 177.50980 * 16 15 14 31 31 H 1.09005 * 109.47738 * 301.17255 * 18 17 16 32 32 H 1.09000 * 109.48827 * 181.14257 * 18 17 16 33 33 H 1.09008 * 109.52162 * 182.48565 * 19 18 17 34 34 H 1.08999 * 109.57217 * 62.33167 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3129 6 1 4.0790 -0.0862 0.5393 7 6 4.2304 -1.1935 2.3579 8 7 3.5764 -1.8377 3.2996 9 14 6.0920 -1.0611 2.4370 10 1 6.4697 0.1611 3.1913 11 1 6.6446 -2.2566 3.1230 12 1 6.6416 -0.9825 1.0598 13 8 2.0064 -0.6737 -1.1667 14 6 2.2002 0.1829 -2.2940 15 6 0.9100 0.2460 -3.1174 16 6 1.1515 1.1000 -4.3650 17 8 2.2324 0.5475 -5.1190 18 6 3.4753 0.5087 -4.4148 19 6 3.3278 -0.3708 -3.1704 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.6053 -0.2617 2.1370 24 1 1.7516 -1.7715 1.2057 25 1 4.0607 -2.2445 4.0351 26 1 2.4629 1.1835 -1.9508 27 1 0.6198 -0.7609 -3.4174 28 1 0.1164 0.6913 -2.5175 29 1 1.4007 2.1177 -4.0646 30 1 0.2499 1.1123 -4.9774 31 1 3.7549 1.5187 -4.1150 32 1 4.2478 0.0949 -5.0630 33 1 4.2618 -0.3662 -2.6083 34 1 3.0884 -1.3909 -3.4706 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695821033.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:30 Heat of formation + Delta-G solvation = -133.910690 kcal Electronic energy + Delta-G solvation = -14955.510808 eV Core-core repulsion = 12465.953755 eV Total energy + Delta-G solvation = -2489.557053 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.59377 -38.70850 -35.44617 -33.87913 -32.24971 -32.00145 -29.30814 -25.61755 -24.93663 -24.43361 -21.99246 -21.22062 -18.54180 -17.94538 -17.06295 -16.92469 -16.53886 -15.89025 -15.68816 -15.33245 -14.49340 -14.33649 -14.07215 -13.65110 -13.40260 -13.32812 -13.01213 -12.76883 -12.62442 -12.28482 -12.25614 -12.19878 -11.67056 -11.39230 -11.21050 -11.06628 -10.61791 -10.57908 -10.19472 -8.19291 -6.28159 1.37668 1.39734 1.50596 2.40760 2.79449 2.99206 3.15743 3.82297 3.86463 4.00762 4.13455 4.19013 4.28287 4.35857 4.42974 4.51573 4.61567 4.68732 4.76265 4.87312 4.89169 5.05870 5.15855 5.18016 5.25318 5.31074 5.43768 5.53237 5.79657 6.22230 6.23226 6.63854 6.84879 7.38936 8.92939 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035000 B = 0.008158 C = 0.006820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.800604 B = 3431.195411 C = 4104.327726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 H 0.051 0.949 4 C 0.024 3.976 5 C -0.525 4.525 6 H 0.055 0.945 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.266 1.266 13 O -0.388 6.388 14 C 0.079 3.921 15 C -0.174 4.174 16 C 0.064 3.936 17 O -0.399 6.399 18 C 0.070 3.930 19 C -0.154 4.154 20 H 0.076 0.924 21 H 0.049 0.951 22 H 0.067 0.933 23 H 0.012 0.988 24 H -0.010 1.010 25 H 0.263 0.737 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.069 0.931 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 7.403 -14.057 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.041 3.959 3 H 0.069 0.931 4 C -0.013 4.013 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.190 1.190 13 O -0.307 6.307 14 C 0.021 3.979 15 C -0.212 4.212 16 C -0.012 4.012 17 O -0.318 6.318 18 C -0.006 4.006 19 C -0.192 4.192 20 H 0.094 0.906 21 H 0.068 0.932 22 H 0.086 0.914 23 H 0.030 0.970 24 H 0.009 0.991 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.088 0.912 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.258 7.047 -14.096 16.093 hybrid contribution 0.799 -0.113 0.995 1.282 sum -2.459 6.933 -13.101 15.025 Atomic orbital electron populations 1.22388 0.95287 1.02069 1.02588 1.22203 0.93272 0.94860 0.85538 0.93146 1.19144 0.95566 0.94729 0.91824 1.21491 0.93275 1.33936 1.07570 0.92719 1.25939 1.03694 0.94958 0.95380 1.70089 1.37579 1.37131 1.12860 0.85487 0.79475 0.77858 0.78493 1.19458 1.20807 1.19037 1.87989 1.86634 1.35954 1.20148 1.22295 0.95319 0.93531 0.86776 1.22857 0.98273 1.02081 0.97994 1.22707 0.90749 0.95656 0.92136 1.87883 1.18845 1.84056 1.41008 1.22635 0.86490 0.99081 0.92421 1.22294 0.98713 1.01099 0.97069 0.90558 0.93221 0.91415 0.96974 0.99129 0.92834 0.92395 0.91602 0.89472 0.91834 0.86667 0.91774 0.86752 0.91188 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.67 9.33 71.98 0.67 -5.00 16 2 C 0.10 4.20 2.67 30.60 0.08 4.29 16 3 H 0.05 2.07 7.37 -2.39 -0.02 2.05 16 4 C 0.02 1.33 4.68 29.85 0.14 1.47 16 5 C -0.52 -30.68 8.88 25.60 0.23 -30.46 16 6 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 8 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 9 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 O -0.39 -16.54 9.42 -148.98 -1.40 -17.95 16 14 C 0.08 2.55 2.69 30.71 0.08 2.64 16 15 C -0.17 -4.51 5.50 30.69 0.17 -4.34 16 16 C 0.06 1.33 6.84 72.02 0.49 1.82 16 17 O -0.40 -9.87 10.77 -148.98 -1.60 -11.47 16 18 C 0.07 1.61 6.84 72.01 0.49 2.10 16 19 C -0.15 -4.61 5.79 30.68 0.18 -4.43 16 20 H 0.08 2.10 5.55 -2.39 -0.01 2.09 16 21 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 24 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 25 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 26 H 0.06 1.82 7.37 -2.39 -0.02 1.80 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 2.06 5.64 -2.39 -0.01 2.04 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -67.83 274.56 3.35 -64.47 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.05 Total: 7.07 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 3.00 Total: -31.60 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.28 Total: -57.83 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -3.01 Total: -29.42 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -67.83 3.35 -64.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695821033.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.438 kcal (2) G-P(sol) polarization free energy of solvation -67.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds